G143093


Basic Information

Item Value
gene id G143093
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9592745 ~ 9593407 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162575
TATTATTACAATTTAAAATTATGGTTTTCTATTCTAATATACTTCAAATTATAATTTATTTCTGTGATGCAAAGCTGAATTATCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGCAATCATTCTAACATTCTAACCACTGTTGGTGCTTTCGGCGGTGGACAGGGGTCAGCATGGGCACCCTGACTGGTCTGCGGCTTCTTATAGCCTACACCATCTTTATGTAGAGCAACAATTCTTTTTTTCAGATCCTCAGAGAGTTCTTTGCCATGAGGTGCCATGTTGAACTTCCAGTGACCAGTATGAGAGAGTGAGAGTGATAACACCAAATTTAACACACCTGCTCCCCATTCACACTTGAGACCTTGTAACACTAACGAGTCACATGACACCGGGGAGAGAGAATGGCTAATTGGGCCCAATTTGGACATTTTTACCTAGGGGTGTACTCACTTTTGTGGCCAGCGGTTTAGACATTAATGGCTGTGTGTTGAGTTATTTTGAGGGGACAGCAAATTTACACTGTTATACAAGCTGTACACTCACTACTTTACATTGTAGCAAAGTGTCATTTCTTCAGTGTTGTCACATGAAAAGATATAATAAAATATTTACAAAAATGTGAGGGGTGTACTCACTTCTGTGAGATACTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162575 True 663 lncRNA 0.40 1 9592745 9593407

Neighbor

gene id symbol gene type direction distance location
CI01000027_09562530_09572606 NA coding upstream 20110 9562496 ~ 9572635 (+)
CI01000027_09484034_09501412 KLHL32 coding upstream 90490 9484034 ~ 9502255 (+)
CI01000027_09459448_09462994 NA coding upstream 129645 9459448 ~ 9463100 (+)
CI01000027_09448387_09455263 NA coding upstream 137452 9447047 ~ 9455293 (+)
CI01000027_09424746_09432978 NA coding upstream 159274 9424746 ~ 9433471 (+)
CI01000027_09661837_09663114 POU3F2B, POU3F2 coding downstream 68116 9661523 ~ 9663857 (+)
CI01000027_09767653_09768743 NA coding downstream 174246 9767653 ~ 9769402 (+)
CI01000027_09774092_09779035 NA coding downstream 180585 9773992 ~ 9779129 (+)
CI01000027_09783491_09789725 PRDM13 coding downstream 190084 9783491 ~ 9790186 (+)
CI01000027_09931428_09937694 NA coding downstream 336208 9929615 ~ 9937752 (+)
G143075 NA non-coding upstream 34365 9558122 ~ 9558380 (+)
G143066 NA non-coding upstream 114559 9476391 ~ 9478186 (+)
G143061 NA non-coding upstream 117135 9475009 ~ 9475610 (+)
G143064 NA non-coding upstream 118055 9474181 ~ 9474690 (+)
G143062 NA non-coding upstream 119806 9471169 ~ 9472939 (+)
G143110 NA non-coding downstream 89119 9682526 ~ 9682767 (+)
G143034 NA non-coding downstream 107597 9701004 ~ 9710260 (+)
G143156 NA non-coding downstream 271224 9864631 ~ 9865105 (+)
G143159 NA non-coding downstream 303286 9896693 ~ 9898052 (+)
G143205 NA non-coding downstream 418466 10011873 ~ 10013349 (+)
CI01000027_08255251_08264629 NA other upstream 1331919 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1560704 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1640803 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2121031 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 2634978 6951132 ~ 6957767 (+)
G143033 NA other downstream 135408 9728815 ~ 9729551 (+)

Expression


Co-expression Network