G143033


Basic Information

Item Value
gene id G143033
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9728815 ~ 9729551 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162507
AGAGCATTTCTTTCATATTGCTAAGTAAATCTGAGTAACACTAATTATCAAAGAAAAAAGTAGGACGGGAACTATTCATTAGTTGTTGACTGCGTGGAAGCAGATCTGAATGAAAGCTTACAGATGATTGTAAGAAAGGGGCGCACATACAACACCACAGAGAAGAACGTTTTTTCATCAGAAGATCATGGATGGATTAACGGTTCACAATAAGATAATTAAGATAAGATGCATTTAGAAAATTTCCGTTTCATGCTGACTTTAAGTCATGTGACACAAACAATGCAGTCAGCATTGAGTCTTAAAGTGGAAGTGTGGTTTACTCATTTTTGTTGACAATCTCTTTAAAATGCCAAAGGTCAAACTGAAACATTTCTCTCACCTGGTTGCCAACCCCTGCCAAAATTGGGATCGCCTGGAAAGGCACCATGGTTATTATGGGCTGGAGGTTCCATGTTTTGCATCTCCTGACCATTGGGCTGAATCCCTGGCGGGTCAGCAACCCCTCCAGTGGATTCTTTCTGTGCTATCCATGCTTGTGCTAGAGCAGCCCAGTCCACTTGACCTGGATCCTGCTGATGCTGAAATGACTGCATCCACTGCTGCTGCGAGCCCAGAGGCCACTGAGGCCAGGGTTGTCCTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU162507 True 644 TUCP 0.44 2 9728815 9729551

Neighbor

gene id symbol gene type direction distance location
CI01000027_09661837_09663114 POU3F2B, POU3F2 coding upstream 64958 9661523 ~ 9663857 (+)
CI01000027_09562530_09572606 NA coding upstream 156180 9562496 ~ 9572635 (+)
CI01000027_09484034_09501412 KLHL32 coding upstream 226560 9484034 ~ 9502255 (+)
CI01000027_09459448_09462994 NA coding upstream 265715 9459448 ~ 9463100 (+)
CI01000027_09448387_09455263 NA coding upstream 273522 9447047 ~ 9455293 (+)
CI01000027_09767653_09768743 NA coding downstream 38102 9767653 ~ 9769402 (+)
CI01000027_09774092_09779035 NA coding downstream 44441 9773992 ~ 9779129 (+)
CI01000027_09783491_09789725 PRDM13 coding downstream 53940 9783491 ~ 9790186 (+)
CI01000027_09931428_09937694 NA coding downstream 200064 9929615 ~ 9937752 (+)
CI01000027_09958003_09959274 NA coding downstream 226274 9955825 ~ 9960262 (+)
G143034 NA non-coding upstream 18555 9701004 ~ 9710260 (+)
G143110 NA non-coding upstream 46048 9682526 ~ 9682767 (+)
G143093 NA non-coding upstream 135408 9592745 ~ 9593407 (+)
G143075 NA non-coding upstream 170435 9558122 ~ 9558380 (+)
G143066 NA non-coding upstream 250629 9476391 ~ 9478186 (+)
G143156 NA non-coding downstream 135080 9864631 ~ 9865105 (+)
G143159 NA non-coding downstream 167142 9896693 ~ 9898052 (+)
G143205 NA non-coding downstream 282322 10011873 ~ 10013349 (+)
G143195 NA non-coding downstream 311355 10040906 ~ 10044074 (+)
G143230 NA non-coding downstream 361148 10090699 ~ 10090928 (+)
CI01000027_08255251_08264629 NA other upstream 1467989 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1696774 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1776873 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2257101 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 2771048 6951132 ~ 6957767 (+)

Expression


Co-expression Network