G143156


Basic Information

Item Value
gene id G143156
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9864631 ~ 9865105 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162638
TAAAAGATTAAATTAGAGATGAAAAATTTGAGAGAAAGTATCCAGAAACTTTGTAAAGACAGATTTAGGTAGACGTAAAAGAGCAAGCGAGATTCGATCACCTCAGCCGTAACGAGGAAAATATCCTCAGGGATGTGTCTCATCGCACAAGCGGTGACCCCCAGCCCCACTCCAGGGAACACATAAGAGTTGTTGCCCTGACCGGGGTAAAACTTCCGGCCATCGGGAAGGGTTACCGGATCAAAGGGACTCCCGCTTGCAAATATTCCCCTTCCCTCAGTGAGTGTGTAGCACTGCTCAGCAGTGCACTCCGCCTTGCTGGTAGGGTTGCTTAGAGCGAAGATGATAGGTCTCT

Function

NR:

description
PREDICTED: 5,6-dihydroxyindole-2-carboxylic acid oxidase-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU162638 True 355 lncRNA 0.48 2 9864631 9865105

Neighbor

gene id symbol gene type direction distance location
CI01000027_09783491_09789725 PRDM13 coding upstream 74445 9783491 ~ 9790186 (+)
CI01000027_09774092_09779035 NA coding upstream 85502 9773992 ~ 9779129 (+)
CI01000027_09767653_09768743 NA coding upstream 95229 9767653 ~ 9769402 (+)
CI01000027_09661837_09663114 POU3F2B, POU3F2 coding upstream 200774 9661523 ~ 9663857 (+)
CI01000027_09562530_09572606 NA coding upstream 291996 9562496 ~ 9572635 (+)
CI01000027_09931428_09937694 NA coding downstream 64510 9929615 ~ 9937752 (+)
CI01000027_09958003_09959274 NA coding downstream 90720 9955825 ~ 9960262 (+)
CI01000027_10048220_10051640 NA coding downstream 183022 10048127 ~ 10051744 (+)
CI01000027_10055186_10067131 AKIRIN1 coding downstream 190081 10055186 ~ 10067131 (+)
CI01000027_10072946_10084310 RHBDL2 coding downstream 207332 10072437 ~ 10084566 (+)
G143034 NA non-coding upstream 154371 9701004 ~ 9710260 (+)
G143110 NA non-coding upstream 181864 9682526 ~ 9682767 (+)
G143093 NA non-coding upstream 271224 9592745 ~ 9593407 (+)
G143075 NA non-coding upstream 306251 9558122 ~ 9558380 (+)
G143066 NA non-coding upstream 386445 9476391 ~ 9478186 (+)
G143159 NA non-coding downstream 31588 9896693 ~ 9898052 (+)
G143205 NA non-coding downstream 146768 10011873 ~ 10013349 (+)
G143195 NA non-coding downstream 175801 10040906 ~ 10044074 (+)
G143230 NA non-coding downstream 225594 10090699 ~ 10090928 (+)
G143237 NA non-coding downstream 242291 10107396 ~ 10107823 (+)
G143033 NA other upstream 135080 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 1603805 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1832590 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1912689 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2392917 7468964 ~ 7471999 (+)

Expression


Co-expression Network