G143195


Basic Information

Item Value
gene id G143195
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10040906 ~ 10044074 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162689
ATTTCATTATTTACATGGCTCCATTACACAGATCCAAACTCGTCAGCTTTGTTTTGTCATCTTTAAGATAGCTATTAATATCACGTTCTGCAAGAGAGGTAGTTTCCACCACATACATAACTAAGTGGGAAGGGGTGCTTCATCACATATCCAGTTGAAAGAGCAACATTGTCTGAAACTTTTGAACACAAATGAACAGCAGTGCAAGAATAACAACAAGTGAGAAAGGGCAGTGTGTGTGTGTAAAATGCCGGCAACCTGCCTTTTTTAAAACAAACAATGTAAACATGTCCACACTGGACTTGCGCCCTTACTTCTCAGTTCCCCCGTGCCATAATACACACATTTCATAACATAATGCTTATAATATCAAAACACATCACAGAGCAAACAAGGCTATGAGACAAGACCAGAGAAAACATCCATCCTATGGTCTCGCGTCATAACCATCCTCCGCATATTTTGCTCTGCGATCGTTCCAAGTACAGCAAAGTTTTTTTTTTAAAAATGAATTCCAAAAAATGATTTGTCAACCAAAACCTTGATATACGATAATGCCTTACCCAATGATTTATGGCACTTGTAACCAGATCTGGTTAAGCAAATGGGGATTCCAACAGAAAATTGCTGATTATGTAGCTTTGGTAGACATTAAAAAAAAAAAAAAAAAAAGTACAGGTGTTGAAAGCACAAGGTCCATTGTGCCACCTCATTAAGCTTGAGGTTAGTTATATGACCTTTTCACTTAAGCTTGTCCCCCCTCCGTATTCTGTTCGCTTAGTTATCCCTGCAGAACGAAGTCAAGTGGCTTTTACTTCCCAAAAAGCAAAATAAAAAAAGAGATACCTGGAGATGCAGTATGCGCTATTATGCTACAAATGCTGCTGTGCTTAGCACCAAGAGGTTTCCGCCACTCCCTGCATGATTAAAACTCAAGCCGAGAGTGCGCATCAAACCTCAGCAAGCGAAAAACAGAATGCGAAATATTAGAAAGGAAATGGTTTGAGTTTTGTCTTGACATCTACTCCTAGGCCTGGTTGAGAAGAAAAAACACTGTCACAAACAGCCATCAAAAAAAGCACAAAACAAAACAGGAGCATAACAGAGCAATGAGTTATTAAGGAGAACATCCAGTTCATCATTTGTCATGGCATTCAGCTCCGCTAAGAGTTCTCGACCGCCCCTTAAGGCCTCAATGACGTAATAACTAGTGGAGCTGTTAACTTTAAAAAAAAATTAGGTGAAGTACATTTAGGAGAAACATCTGCCTGCCAAATGGTCATCACCTTATTAAGACGCAAATCTAAAAATAGCTGTAAAATATATTACGCAGCTGAAGCATTCAAGGGGAGGGCAAAAAGCCAAAGCGGAGCCTTCATTCATATGTTGGCTTAAGAGAGCAGCAGTGAGACCTTGTTACGCCTGAACCTTCAGAAGGCTCTTTAACTGAAAGGTCATCATCTCACGATGATCGCAAGCACCCATGGGAAGAGACACCCAGTGGCTCGGTGGCTTGGGCAGAACACTTGGGGATGGGGGCTCACTAAACTTGGCTCCAGCATAGTTCTGACCACACTGAGCTGACAAAAGTTTGTTCAGATGGGACATGGTACCCTCCCAATTCTGATCATATGGTGTGGCAAAACGAACTGAGGCATTCTTCTTGTCTACAGACGCGGCCTGCCGCGCCTCAGGAGACCAAGAATAGCTGGTGCCCTTCTCACCCCTGCGATGGCTGTGGTGATGGGGCACCCCTAAGGCTCCTGAGGAGGCGGAATGCACCACTCCATTCTGGTCTCGACTTCTCTGCTTGCCCCTGCCAATTTGGTGGCTCTTCTTGGGTGCTGGGCGATCTGGAATGTTGTATCTCTCACCACCTCCCATACTGCTTTGAC
>TU162691
ATTTCATTATTTACATGGCTCCATTACACAGATCCAAACTCGTCAGCTTTGTTTTGTCATCTTTAAGATAGCTATTAATATCACGTTCTGCAAGAGAGGTAGTTTCCACCACATACATAACTAAGTGGGAAGGGGTGCTTCATCACATATCCAGTTGAAAGAGCAACATTGTCTGAAACTTTTGAACACAAATGAACAGCAGTGCAAGAATAACAACAAGTGAGAAAGGGCAGTGTGTGTGTGTAAAATGCCGGCAACCTGCCTTTTTTAAAACAAACAATGTAAACATGTCCACACTGGACTTGCGCCCTTACTTCTCAGTTCCCCCGTGCCATAATACACACATTTCATAACATAATGCTTATAATATCAAAACACATCACAGAGCAAACAAGGCTATGAGACAAGACCAGAGAAAACATCCATCCTATGGTCTCGCGTCATAACCATCCTCCGCATATTTTGCTCTGCGATCGTTCCAAGTACAGCAAAGTTTTTTTTTTAAAAATGAATTCCAAAAAATGATTTGTCAACCAAAACCTTGATATACGATAATGCCTTACCCAATGATTTATGGCACTTGTAACCAGATCTGGTTAAGCAAATGGGGATTCCAACAGAAAATTGCTGATTATGTAGCTTTGGTAGACATTAAAAAAAAAATAAAAAAATAAATCACACTTAGTTTTCTAAGCTATAACATAAGGGATGCAGAAAAGTAAAAGTTTAACGCTGCAATAGAGCTTGTGAACCTTAATGAATTTCAACACCTATAGTGCAATGCGCACAGCGCCATTAAAAAAACAAAAACAAAAAAAAAAGTACAGGTGTTGAAAGCACAAGGTCCATTGTGCCACCTCATTAAGCTTGAGGTTAGTTATATGACCTTTTCACTTAAGCTTGTCCCCCCTCCGTATTCTGTTCGCTTAGTTATCCCTGCAGAACGAAGTCAAGTGGCTTTTACTTCCCAAAAAGCAAAATAAAAAAGGAGAAAATATATCCCGATATGTGAATCTTCATACAAATCCGAGGCAACAACGGAATGGTATTATTCTCCTCCAGTTTGTCTCCGTCTAACAAC
>TU162692
ATTTCATTATTTACATGGCTCCATTACACAGATCCAAACTCGTCAGCTTTGTTTTGTCATCTTTAAGATAGCTATTAATATCACGTTCTGCAAGAGAGGTAGTTTCCACCACATACATAACTAAGTGGGAAGGGGTGCTTCATCACATATCCAGTTGAAAGAGCAACATTGTCTGAAACTTTTGAACACAAATGAACAGCAGTGCAAGAATAACAACAAGTGAGAAAGGGCAGTGTGTGTGTGTAAAATGCCGGCAACCTGCCTTTTTTAAAACAAACAATGTAAACATGTCCACACTGGACTTGCGCCCTTACTTCTCAGTTCCCCCGTGCCATAATACACACATTTCATAACATAATGGAGAAAATATATCCCGATATGTGAATCTTCATACAAATCCGAGGCAACAACGGAATGGTATTATTCTCCTCCAGTTTGTCTCCGTCTAACAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162689 False 1895 lncRNA 0.43 2 10040906 10042949
TU162691 False 1081 lncRNA 0.37 2 10040906 10044074
TU162692 True 453 lncRNA 0.40 2 10040906 10044074

Neighbor

gene id symbol gene type direction distance location
CI01000027_09958003_09959274 NA coding upstream 80644 9955825 ~ 9960262 (+)
CI01000027_09931428_09937694 NA coding upstream 103154 9929615 ~ 9937752 (+)
CI01000027_09783491_09789725 PRDM13 coding upstream 250720 9783491 ~ 9790186 (+)
CI01000027_09774092_09779035 NA coding upstream 261777 9773992 ~ 9779129 (+)
CI01000027_09767653_09768743 NA coding upstream 271504 9767653 ~ 9769402 (+)
CI01000027_10048220_10051640 NA coding downstream 4053 10048127 ~ 10051744 (+)
CI01000027_10055186_10067131 AKIRIN1 coding downstream 11112 10055186 ~ 10067131 (+)
CI01000027_10072946_10084310 RHBDL2 coding downstream 28363 10072437 ~ 10084566 (+)
CI01000027_10090545_10093306 CX55.5 coding downstream 46471 10090545 ~ 10093746 (+)
CI01000027_10098742_10105152 RRAGC.S, RRAGCA, RRAGCB, RRAGC coding downstream 54638 10098712 ~ 10105308 (+)
G143205 NA non-coding upstream 27557 10011873 ~ 10013349 (+)
G143159 NA non-coding upstream 142854 9896693 ~ 9898052 (+)
G143156 NA non-coding upstream 175801 9864631 ~ 9865105 (+)
G143034 NA non-coding upstream 330646 9701004 ~ 9710260 (+)
G143110 NA non-coding upstream 358139 9682526 ~ 9682767 (+)
G143230 NA non-coding downstream 46625 10090699 ~ 10090928 (+)
G143237 NA non-coding downstream 63322 10107396 ~ 10107823 (+)
G143240 NA non-coding downstream 64393 10108467 ~ 10108834 (+)
G143244 NA non-coding downstream 69880 10113954 ~ 10114160 (+)
G143246 NA non-coding downstream 70700 10114774 ~ 10115011 (+)
G143033 NA other upstream 311355 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 1780080 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 2008865 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2088964 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2569192 7468964 ~ 7471999 (+)

Expression


Co-expression Network