XLOC_000865


Basic Information

Item Value
gene id XLOC_000865
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58586353 ~ 58595767 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003267
TCCCACTGGGCGGAGTCTGATTTCGTGTGAGCGCAACCTCAGCATCTGTAAGACGTGATCATACAGAACTGCTTTCACCACTGTTACAGCATTAAACACAGCATGTCTTATACACCGATGCAATCTCCTTTGCATTATAACCTTTTGAATTAGAGGCTACtttgtattaatttgtatgatcttattcaaaaatgtattacgacttgctcatcctccaatgacaGAAAGGTCTATGGAATGGGGTTTGGATAggatgcctccttttaaaaatcataatttttttttaacaaattaaattgcATTAATTAGCGCAAATTAGCCACTTTACTGACAATTTGTAAAATAGTTGTTTCTTCGTGAGATCAAGCTGGTTGGAAACTGACTGAACTCTAATGGCTAGTTTATACTTCAGCATCAAGTGTGAGCGGATGGTCCGCCGGTGCCTTTCTGCAGTCACATACATGTCAGACATGCACCTTTGGTAAATATTCCAATGCATATTGCAAGagctgtgattggttggcttggtatcaGTGAGGAATATGGGCGGGGCTGATAGCAGAGCCCAGCCAGTGGACCGAGTGTTTAGAAGTGTCAAGTACTGTGGAGGAGCTCCATATAGATCACTTGGTTTTGGGGTTActttagagcacaggtgtcaaactcagttccaaaagggccgcagctctgcacagtttagttccaacctgatataaacacacctgatcaaactaattgagtccttcaggcttgtttgaaacctacaggtaagtgtgttggagcagggttggaactaaactgtgcagggcttcggccctccaggaaataagtttgacacccctgctttagagttAAAGTTGTTGAACGTCTGCCGGTTCCCGCCTTTTTCTTCCTTGAATGATTAAGTGTGAGCTACTTGAGGTACAGTATGTTAGCATTTCCGGTGTATAAAAAACACCCATTAAGAAACTCAAGAGAGGAACTGACAAACCAACACTGCCTGCTAGCATTTCGGATGTGTTTTTACCGTgcaacacaaacagaatgcagaagtataaatgcacaagcCAATCACTCGGTGTAAAAGTATAATCCAGGAGTCTTACAGGTATTTTGTGTCTCCATCTTGGTCACAGGATCTTTCAGCTGAGGACCAATCAGACGCATGCTGTTCTCCACCATGTCCAGAAATACACTCAGATTCTCGCCGTCAGCGACTTTTCCCTCCAGCAGCAGATCATCAGTGGAGTTGCACAAGTTCTGTCAAATTTATAATTGACGTTTGTTTGTAAGTGCACGTTCACAAACCGCTAAATGAATTTCTCaggcagtgtgtgtgtttcacctCCAGTAGCTCCTCTGCATTGAAATGTTTTTCTACTGGATCATTCAGAGACTCGCAGCTGTCCTTCAGCAGAGACATCATCTGATTCAACTACAAGAAAACACAGAAATCAAAGTCTATAGGAGAGTCAAAGAAGAGGCGGTgcagttttgcttttaaaaataaacatttttttatgttcaacacacacataataattcaaaggtttataaccacttaagggagagtaaatCGTGAGaaggttttgggtgaactatctctttaaacattattttactaaTATCATATTTacaaaactaataatattaagtGGGTTTTTACCTTCTCTGGTGTGTGGTCTTCATCAGGCTTAGATTTAAACTGATCACATTCGATTTCTGTGCACATCAAAATAATCAATCACACTATATTGCACTGATTAACCTTCATATTATTCTATTCACATTCTCATTTGCAGATGTAACCCGTGTTCACTGAAGGAGAGGGATtgctctgcatgaaagactcgtgaatggcagattaacctgctgctgctgaaGCTACaataaggtaaataaataaatataacagaaatgtggatgatgtgtggagatgattgacagggcccGAAAATAAGCAACAGAACAGTCCATTAATGAGGAAGTAGTTTGTTTCAAAGCTTGCATACTATTCTGCTACACACTCAAATGTATGTGCTTTTTTTCACAAACAAAGTACACACTTTTAGGACGTAGTATAAGTAGGTATAttaggacagtggttctcaaagtgggggtcg
>TCONS_00003268
acctgctgctgctgaaGCTACaataagATGGAGCAGtggtacggtttctctccggtgtgaactcgTTCGTGGATCTTCAGCACGTCCGACCGCGCGAAcatcttgtcgcagtgtgaacacttaaaAGGTctttctccggtgtgaatcctcttGTGCTTCAGTAGATTGGTGTGTTGGCGGAAGCTCCTCCCGCAGACGCTGCAGTGGTACGGCCGTTCTCCAGTATGGACTCTCTGGTGGACCCTGAAATGCGCCGGATCTGAAAAACTCTTCCCGCAGTGGAAACACAAATACGGCTTCTCTCCAGAATGCATTCGCTCGTGGCGCTTCAAGTGCGCGATCTGCCGGAACCGCTTGTCGCATTGTAGACACTGATGCATTTTTTCTGAATGTATTTTCTGGTGTGAAATTAAACAAATGGGTTGCTTGAAGGTTTTTCCGCACTCGCTGCACTGATACGGCCGCTCGCTGGCATGCGATCGCATGTGCGTTTTAAAATGCGAGCCGTCTCTGAAGGTCTTGACGCAGTGAGGGCATTTATACGGCCTTTCGCCGGTGTGGATTCTCTTGTGCACCATCATGGACTGTTTGGTGCTGAAGTGCTTGTCGCATTCGCTGCAGTGGAACGGCTTCTCTTTGgtgtgtgttttcatgtgtgtTTTCAGATTGCCGGAGGAGAAAGAAACCTTCCCGCATAGCTCGCAGTGAAACTCTTTCTTCACCGTGTGCACTTTTGAGTGAACTCGACGCTCTTTTAAGGTGGGAAAGCTGATGTCGCATCTCTTGCAGAAGAAAACCTTCTGCCCGGAGTGCTTTTGCTCGTGTTTCAATAGATTTCCGAGCTTTCTGAatgtttttttgcattgtttgcagGGGAAAGTGGTCTTCGGCTTCTGTTTTGAAGTTGATGCGGTTTCTTCATCAGATGAATCTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003267 False 2123 lncRNA 0.40 1 58586353 58588475
TCONS_00003268 True 936 lncRNA 0.50 2 58588220 58595767

Neighbor

gene id symbol gene type direction distance location
XLOC_000864 NA coding upstream 1221 58577919 ~ 58585132 (+)
XLOC_000863 zgc:172091 coding upstream 48997 58535306 ~ 58537356 (+)
XLOC_000862 si:ch73-236c18.9 coding upstream 55868 58508790 ~ 58530485 (+)
XLOC_000861 si:ch73-236c18.7 coding upstream 110635 58470287 ~ 58475718 (+)
XLOC_000860 si:ch73-236c18.5 coding upstream 126486 58456494 ~ 58459867 (+)
XLOC_000866 si:ch73-221f6.1 coding downstream 5913 58601680 ~ 58606490 (+)
XLOC_000867 si:ch73-236c18.9 coding downstream 13211 58608978 ~ 58613487 (+)
XLOC_000868 si:ch73-221f6.3 coding downstream 18205 58613972 ~ 58618868 (+)
XLOC_000869 zgc:174890 coding downstream 25186 58620953 ~ 58622498 (+)
XLOC_000870 si:ch73-221f6.4 coding downstream 32398 58628165 ~ 58632064 (+)
XLOC_000837 BX927298.1 non-coding upstream 412764 58160151 ~ 58173589 (+)
XLOC_000829 BX469930.2 non-coding upstream 568989 58003615 ~ 58017364 (+)
XLOC_000826 NA non-coding upstream 654761 57926893 ~ 57931592 (+)
XLOC_000822 NA non-coding upstream 843917 57742079 ~ 57742436 (+)
XLOC_000871 NA non-coding downstream 50918 58646685 ~ 58669075 (+)
XLOC_000874 NA non-coding downstream 182286 58778053 ~ 58782292 (+)
XLOC_000876 NA non-coding downstream 257403 58853170 ~ 58854377 (+)
XLOC_000878 NA non-coding downstream 360299 58956066 ~ 58959457 (+)
XLOC_000879 NA non-coding downstream 379250 58975017 ~ 58976687 (+)

Expression


Co-expression Network