XLOC_000866 (si:ch73-221f6.1)


Basic Information

Item Value
gene id XLOC_000866
gene name si:ch73-221f6.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58601680 ~ 58606490 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001365
TCCACCGTGCCGCCGCCTGTGCTGGAGCGACATcgcacattattaatattataataattgaaAATACTCAAAACATGGGGGATTTAGGAATAAGCTAAATCCTTAAGTGTTTATCATTTATCTTGCTTTTATTTTGagaatgattcatttattttaacgtgaattaaaatgtaatactGAACTGCTGTTTACAGCTTTGTGACTGCTGAAGGACTGAGCTTAAAGACACTGTAGGGGGTGCTGTGAGGGTTTTCGTCTACCAGACCGCCAAACCACTGAGGAAATAAACACTGGAGCCCTTGATGATGTTGAGCATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCATCAGTCAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAgctgagagaaagaggagagaaaCTCCAGCCAGAGCGTCAGGATTCGCTGTGCGGCGTCAGAGCTCAGAGATCCAGAGACACGCAGAACTCAGAGCTCAGCCTGACTTTACTCTGTTATACTGACGCTCAGGATCATCAGAGCTCTGAGCCAGACGCTGGAGAACAGCAGACCACACTGAAGATGTGCTCCGTCAGACTGGAGGACTGCAGGAACCTGATCCAGAGAACTGAAAACACCACAGAAGAAGACGATCAGAGAGACCCAGAGGATGATGGTGATTATGATGAAGATGGGAAACATGATGGTGAAAACGAAGATGAGGATGATAATAATGCGGAAGATGGaaaaaattatgatgatgatgaatttATTCCTGCAGATGACAACATTGGATCGTCTGATGAAGAAGCGCCTTTACCTTCGAAAGATGAGCTGAAGGCCAAGAAGAGTTTCTCCTGCACCTCCTGTGGAAAAGCATACACCTGTCAAAGTTATTTATTGATTCATGAAAGAAAACACTCAGAACCGAAGGTCTTCATCTGCTGGAGATGTCGTAAGTGCTTTCCAACATTACAGGAGAGAAAACTTCACCTGAAAGAGCATCTGGCAGAAAAGGAGTTCCACTGTGAACAGTGCGGGAAGAACTTTTTATTGTCTAATCAGCTAAAAGTTCACATGAAGACGCACAGCGGTGACCAGCGTGTCCAGTGTGACGTATGCAACAAATCATTCAGCACCAAAGGGAACCTGGAGGCTCATAAGAGAATCCACACGGGCGAGCGGCCGTATAAATGCCCTCACTGCGAGATGAGCTTCAACCACAAACCCCACATGAAGAACCACATCCGCATTCACACCAAAGAGAGGCCGTACCAGTGCAGCGAGTGCGGAAAAACCTTTGGAAACATGACCTCTCTAAGGTCACATCTAAAAATACACTCTGAGGAAAAACCGCATCAGTGCAAACACTGCGACAAGCGATTCCGGCAGAAGTCAGCTTTGACTTCTCATGAAAAGACTCAcagtggagagaaaccgtacCTGTGCGCTGAATGCGGGATGAGGTTTTATATTCAAGCTCAAATGGTTTATCACCaaagaatccacactggagagaaaccgtacctGTGCAACATCTGTGGCCGGAGTTTCAACAAACCAGGCATCTTAATAAACCAcatgaggactcacactggagaaagaccctataagtgttcacactgcgacaagacgTTTGCACGATCTGACGTGCTGAAGACCCACGAGAGGGTTcataccggagagaaaccgtaccgCTGCTCCATCTGCGAAGAGAGGTTTGCGTATTTAGGAAGTTTTCAGAGCCACCAGAAGAAACATGGAGGAGAACTAGTGGATGCGCAGATCAGCGCATGATGGAGAATTGACGACTGAGTGTTTCTGGCAGCGTTTTTCAATCCTAGTCCTCACTCTCCACTGCTTTTcatgttttgatattttaaaaagaagttaATATTATATACCAGTAGTCAGTGACTTCCATAATAGGCCTACAGCGTCTCATAAACACAGCACTCATGTGAGAGGTGCTGCAAAGCATGTGAGCATAACAGTCACGTGCATTAAGCGcttacatagaaaaacaatggGAAAGTGGTACACTGGAATGGAGAAGCGTGTTCTTT
>TCONS_00001366
gtttttactatgATGTTGAGCATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCATCAGTCAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAgctgagagaaagaggagagaaaCTCCAGCCAGAGCGTCAGGATTCGCTGTGCGGCGTCAGAGCTCAGAGATCCAGAGACACGCAGAACTCAGAGCTCAGCCTGACTTTACTCTGTTATACTGACGCTCAGGATCATCAGAGCTCTGAGCCAGACGCTGGAGAACAGCAGACCACACTGAAGATGTGCTCCGTCAGACTGGAGGACTGCAGGAACCTGATCCAGAGAACTGAAAACACCACAGAAGAAGACGATCAGAGAGACCCAGAGGATGATGATGGGAAACATGATGGTGAAAACGAAGATGAGGATGATAATAATGCGGAAGATGGaaaaaattatgatgatgatgaatttATTCCTGCAGATGACAACATTGGATCGTCTGATGAAGAAGCGCCTTTACCTTCGAAAGATGAGCTGAAGGCCAAGAAGAGTTTCTCCTGCACCTCCTGTGGAAAAGCATACACCTGTCAAAGTTATTTATTGATTCATGAAAGAAAACACTCAGAACCGAAGGTCTTCATCTGCTGGAGATGTCGTAAGTGCTTTCCAACATTACAGGAGAGAAAACTTCACCTGAAAGAGCATCTGGCAGAAAAGGAGTTCCACTGTGAACAGTGCGGGAAGAACTTTTTATTGTCTAATCAGCTAAAAGTTCACATGAAGACGCACAGCGGTGACCAGCGTGTCCAGTGTGACGTATGCAACAAATCATTCAGCACCAAAGGGAACCTGGAGGCTCATAAGAGAATCCACACGGGCGAGCGGCCGTATAAATGCCCTCACTGCGAGATGAGCTTCAACCACAAACCCCACATGAAGAACCACATCCGCATTCACACCAAAGAGAGGCCGTACCAGTGCAGCGAGTGCGGAAAAACCTTTGGAAACATGACCTCTCTAAGGTCACATCTAAAAATACACTCTGAGGAAAAACCGCATCAGTGCAAACACTGCGACAAGCGATTCCGGCAGAAGTCAGCTTTGACTTCTCATGAAAAGACTCAcagtggagagaaaccgtacCTGTGCGCTGAATGCGGGATGAGGTTTTATATTCAAGCTCAAATGGTTTATCACCaaagaatccacactggagagaaaccgtacctGTGCAACATCTGTGGCCGGAGTTTCAACAAACCAGGCATCTTAATAAACCAcatgaggactcacactggagaaagaccctataagtgttcacactgcgacaagacgTTTGCACGATCTGACGTGCTGAAGACCCACGAGAGGGTTcataccggagagaaaccgtaccgCTGCTCCATCTGCGAAGAGAGGTTTGCGTATTTAGGAAGTTTTCAGAGCCACCAGAAGAAACATGGAGGAGAACTAGTGGATGCGCAGATCAGCGCATGA

Function

symbol description
si:ch73-221f6.1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-41 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000104904

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001365 False 2104 mRNA 0.45 5 58601680 58606490
TCONS_00001366 True 1527 mRNA 0.47 5 58602506 58606221

Neighbor

gene id symbol gene type direction distance location
XLOC_000865 NA coding upstream 5913 58586353 ~ 58595767 (+)
XLOC_000864 NA coding upstream 16548 58577919 ~ 58585132 (+)
XLOC_000863 zgc:172091 coding upstream 64324 58535306 ~ 58537356 (+)
XLOC_000862 si:ch73-236c18.9 coding upstream 71195 58508790 ~ 58530485 (+)
XLOC_000861 si:ch73-236c18.7 coding upstream 125962 58470287 ~ 58475718 (+)
XLOC_000867 si:ch73-236c18.9 coding downstream 2488 58608978 ~ 58613487 (+)
XLOC_000868 si:ch73-221f6.3 coding downstream 7482 58613972 ~ 58618868 (+)
XLOC_000869 zgc:174890 coding downstream 14463 58620953 ~ 58622498 (+)
XLOC_000870 si:ch73-221f6.4 coding downstream 21675 58628165 ~ 58632064 (+)
XLOC_000871 NA coding downstream 40195 58646685 ~ 58669075 (+)
XLOC_000837 BX927298.1 non-coding upstream 428091 58160151 ~ 58173589 (+)
XLOC_000829 BX469930.2 non-coding upstream 584316 58003615 ~ 58017364 (+)
XLOC_000826 NA non-coding upstream 670088 57926893 ~ 57931592 (+)
XLOC_000874 NA non-coding downstream 171563 58778053 ~ 58782292 (+)
XLOC_000876 NA non-coding downstream 246680 58853170 ~ 58854377 (+)
XLOC_000878 NA non-coding downstream 349576 58956066 ~ 58959457 (+)
XLOC_000879 NA non-coding downstream 368527 58975017 ~ 58976687 (+)

Expression


Co-expression Network