XLOC_000868 (si:ch73-221f6.3)


Basic Information

Item Value
gene id XLOC_000868
gene name si:ch73-221f6.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58613972 ~ 58618868 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001369
AGCTGAGCGGTATTGCAGGGGGCGCTGTGGTGATTTTCTTCTACCTTGCCGCCAAACCACTGAAGGAATAAACACTGGAGCCCGCGATGATGTTGAGCATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCATCAGTCAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAgctgagagaaagaggagagaaaCTCCAGCCAGAGCGTCAGGATTCGCTGTGCGGCGTCAGAGCTCAGAGATCCAGAGACGCGCAGAACTCAGAGCTCAGCCTGACTTTACTCTGTTATACTGACGCTCAGGATCATCAGAGCTCTGAGCCAGACGCTGGAGAACAGCAGACCACACTGAAGATGTGCTCCGTCAGGCTGGAGGACTGCAGGAACCTGATCCAGAGAACTGAAAACACCACAGAAGAAGACGATCAGAGAGACCAGGAGGATGATGATGTTGATAATGATGAAAATGAAaaagatgacgatgatgatgaatTTATTCCTCCAGGTGACAACACTGGATCGTCTGATGAAGAAGCGCCGTTAACTTTGAAAGGTAAGCCGAAGGTCAAGAAGAGTTTCTCCTGCACCTCCTGTGGAAAAGCATTCGCCTGTCAAAGTTATTTATTGATTCATGAAAGAAAACACTCAGAACCGAAGGTCTTCATCTGCTGGAGATGTCGTAAGTGCTTTCCAACATTACAGGAGAGAAAACTTCACCTGAAAGAGCATCTGGCAGAAAAGGAGTTCCACTGTGAACAGTGCGGGAAGAACTTTTTATTGTCTAATCAGCTAAAAGTTCACATGAAGACGCACAGCGGTGACCAGCGTGTCCAGTGTGACGTATGCAACAAATCATTCAGCACCAAAGCAAACCTGGAGGTTCATAAGAGAATCCACACGGGCGAGCGGCCGTATAAATGCCCTCACTGCAAGAAGAGCTTTAATTACAAATCCTACATGAAGAACCACATCCGCATTCACACCAACGAGAGGCCGTACCAGTGCAGCGAGTGCGGAAAAACCTTCAAAACAAACAACTCTCTAAACTCTCATCTAAAATTCCACTCTGAGGAAAAACCGCATCAGTGCAAATACTGCGACAAGCGATTCCGCAtgaaagcaaatctgaatgtccatgagaggattcacaccggagagaagccgtaccTGTGCGCCGAATGCGGGAAGAGGGTTAAAACTTCTACTGAGCTGGTTTGTCACCaaagaatccacactggagaaaaaccgtacCTGTGCAACATATGTGGGCGGAGTTTCAGTAAACCAACCATCTTAATAAACCAcatgaggactcacactggagaaagACCCTATAaatgttcacactgcgacaagacgTTTGCACGATCTGACGTGCTGAAGACCCACGAGAGGGTTcataccggagagaaaccgtaccgCTGCTCCATCTGCGAAGAGAGGTTTGCGTATTTAGGAAGTTTTCAGAGCCACCAGAAGAAACATGGAGCAGAACTAGTGGATGCGCAGATCAGCGCATGATGGAGAATTGACGACTGAGTGTTTCTGACAGCGTTTCTTCATCCTAGTCCTCAATCTCCACTGCTCTGCGTATTTTGATATTTGGAAAAGAAGTTAAAATTGTGCACTgctagctattgacttccatagtacgtTGTCATCAAAACAGTGCTGATGTGAAAGATGCTGCAAAACGCATAAGCGTAATGGTCATGTCCATTAACTGCGTGTCTACCTAGAGAAACAATGAAAAAGTAGCTCACTAGAATGGACAAACCTGTTCTTTGCGATATTATATTACCATATTAAAATacacctttaaaaataaaatttataaatcaaAAACTAAGTGTCATAAATTAAACAAGTATATGGTTGGATTTGAAAGCATCAACTACTCGAGTATGTACTGTACAAGTAAATCCAAATTTACTACACGACTGTTCGAAAAGTGCATTCTGtatcagggtgtccgcggggtctttaaaagtattaaaaggtgataa
>TCONS_00001370
GTTTGTGTGCAGATGTTGAGCATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCATCAGTCAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAgctgagagaaagaggagagaaaCTCCAGCCAGAGCGTCAGGATTCGCTGTGCGGCGTCAGAGCTCAGAGATCCAGAGACGCGCAGAACTCAGAGCTCAGCCTGACTTTACTCTGTTATACTGACGCTCAGGATCATCAGAGCTCTGAGCCAGACGCTGGAGAACAGCAGACCACACTGAAGATGTGCTCCGTCAGGCTGGAGGACTGCAGGAACCTGATCCAGAGAACTGAAAACACCACAGAAGAAGACGATCAGAGAGACCAGGAGGATGATGATGTTGATAATGATGAAAATGAAaaagatgacgatgatgatgaatTTATTCCTCCAGAAAATAACACAAACACAACCAGAAAATTACGTAAACGTAGCCAGAACAAagcgaaaaaacaaaacaaactgggTACCCTCAGATATTTTATTGAACTTCTGCTTCTTTCAGGTGACAACACTGGATCGTCTGATGAAGAAGCGCCGTTAACTTTGAAAGGTAAGCCGAAGGTCAAGAAGAGTTTCTCCTGCACCTCCTGTGGAAAAGCATTCGCCTGTCAAAGTTATTTATTGATTCATGAAAGAAAACACTCAGAACCGAAGGTCTTCATCTGCTGGAGATGTCGTAAGTGCTTTCCAACATTACAGGAGAGAAAACTTCACCTGAAAGAGCATCTGGCAGAAAAGGAGTTCCACTGTGAACAGTGCGGGAAGAACTTTTTATTGTCTAATCAGCTAAAAGTTCACATGAAGACGCACAGCGGTGACCAGCGTGTCCAGTGTGACGTATGCAACAAATCATTCAGCACCAAAGCAAACCTGGAGGTTCATAAGAGAATCCACACGGGCGAGCGGCCGTATAAATGCCCTCACTGCAAGAAGAGCTTTAATTACAAATCCTACATGAAGAACCACATCCGCATTCACACCAACGAGAGGCCGTACCAGTGCAGCGAGTGCGGAAAAACCTTCAAAACAAACAACTCTCTAAACTCTCATCTAAAATTCCACTCTGAGGAAAAACCGCATCAGTGCAAATACTGCGACAAGCGATTCCGCAtgaaagcaaatctgaatgtccatgagaggattcacaccggagagaagccgtaccTGTGCGCCGAATGCGGGAAGAGGGTTAAAACTTCTACTGAGCTGGTTTGTCACCaaagaatccacactggagaaaaaccgtacCTGTGCAACATATGTGGGCGGAGTTTCAGTAAACCAACCATCTTAATAAACCAcatgaggactcacactggagaaagACCCTATAaatgttcacactgcgacaagacgTTTGCACGATCTGACGTGCTGAAGACCCACGAGAGGGTTcataccggagagaaaccgtaccgCTGCTCCATCTGCGAAGAGAGGTTTGCGTATTTAGGAAGTTTTCAGAGCCACCAGAAGAAACATGGAGCAGAACTAGTGGATGCGCAGATCAGCGCATGA
>TCONS_00001371
ATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCATCAGTCAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAgctgagagaaagaggagagaaaCTCCAGCCAGAGGATTCGCTGTGCGGCGTCAGAGCTCAGAGATCCAGAGACGCGCAGAACTCAGAGCTCAGCCTGACTTTACTCTGTTATACTGACGCTCAGGATCATCAGAGCTCTGAGCCAGACGCTGGAGAACAGCAGACCACACTGAAGATGTGCTCCGTCAGGCTGGAGGACTGCAGGAACCTGATCCAGAGAACTGAAAACACCACAGAAGAAGACGATCAGAGAGACCAGGAGGATGATGATGTTGATAATGATGAAAATGAAaaagatgacgatgatgatgaatTTATTCCTCCAGGTGACAACACTGGATCGTCTGATGAAGAAGCGCCGTTAACTTTGAAAGGTAAGCCGAAGGTCAAGAAGAGTTTCTCCTGCACCTCCTGTGGAAAAGCATTCGCCTGTCAAAGTTATTTATTGATTCATGAAAGAAAACACTCAGAACCGAAGGTCTTCATCTGCTGGAGATGTCGTAAGTGCTTTCCAACATTACAGGAGAGAAAACTTCACCTGAAAGAGCATCTGGCAGAAAAGGAGTTCCACTGTGAACAGTGCGGGAAGAACTTTTTATTGTCTAATCAGCTAAAAGTTCACATGAAGACGCACAGCGGTGACCAGCGTGTCCAGTGTGACGTATGCAACAAATCATTCAGCACCAAAGCAAACCTGGAGGTTCATAAGAGAATCCACACGGGCGAGCGGCCGTATAAATGCCCTCACTGCAAGAAGAGCTTTAATTACAAATCCTACATGAAGAACCACATCCGCATTCACACCAACGAGAGGCCGTACCAGTGCAGCGAGTGCGGAAAAACCTTCAAAACAAACAACTCTCTAAACTCTCATCTAAAATTCCACTCTGAGGAAAAACCGCATCAGTGCAAATACTGCGACAAGCGATTCCGCAtgaaagcaaatctgaatgtccatgagaggattcacaccggagagaagccgtaccTGTGCGCCGAATGCGGGAAGAGGGTTAAAACTTCTACTGAGCTGGTTTGTCACCaaagaatccacactggagaaaaaccgtacCTGTGCAACATATGTGGGCGGAGTTTCAGTAAACCAACCATCTTAATAAACCAcatgaggactcacactggagaaagACCCTATAaatgttcacactgcgacaagacgTTTGCACGATCTGACGTGCTGAAGACCCACGAGAGGGTTcataccggagagaaaccgtaccgCTGCTCCATCTGCGAAGAGAGGTTTGCGTATTTAGGAAGTTTTCAGAGCCACCAGAAGAAACAT

Function

symbol description
si:ch73-221f6.3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104807

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001369 False 2056 mRNA 0.45 4 58613972 58618868
TCONS_00001370 False 1605 mRNA 0.47 4 58614897 58618383
TCONS_00001371 True 1431 mRNA 0.47 3 58614918 58618347

Neighbor

gene id symbol gene type direction distance location
XLOC_000867 si:ch73-236c18.9 coding upstream 485 58608978 ~ 58613487 (+)
XLOC_000866 si:ch73-221f6.1 coding upstream 7482 58601680 ~ 58606490 (+)
XLOC_000865 NA coding upstream 18205 58586353 ~ 58595767 (+)
XLOC_000864 NA coding upstream 28840 58577919 ~ 58585132 (+)
XLOC_000863 zgc:172091 coding upstream 76616 58535306 ~ 58537356 (+)
XLOC_000869 zgc:174890 coding downstream 2085 58620953 ~ 58622498 (+)
XLOC_000870 si:ch73-221f6.4 coding downstream 9297 58628165 ~ 58632064 (+)
XLOC_000871 NA coding downstream 27817 58646685 ~ 58669075 (+)
XLOC_000872 LO017784.1 coding downstream 58566 58677434 ~ 58681545 (+)
XLOC_000873 CABZ01084617.1 coding downstream 116458 58735326 ~ 58744037 (+)
XLOC_000837 BX927298.1 non-coding upstream 440383 58160151 ~ 58173589 (+)
XLOC_000829 BX469930.2 non-coding upstream 596608 58003615 ~ 58017364 (+)
XLOC_000826 NA non-coding upstream 682380 57926893 ~ 57931592 (+)
XLOC_000874 NA non-coding downstream 159185 58778053 ~ 58782292 (+)
XLOC_000876 NA non-coding downstream 234302 58853170 ~ 58854377 (+)
XLOC_000878 NA non-coding downstream 337198 58956066 ~ 58959457 (+)
XLOC_000879 NA non-coding downstream 356149 58975017 ~ 58976687 (+)

Expression


Co-expression Network