G149329


Basic Information

Item Value
gene id G149329
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 6699513 ~ 6701240 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU169615
CTTCTATTGTCATGTTTTCTAGCAAACAGTAGTTTAGCCTGATGCTAAATGTAGATATATTCATCTGTGTCTTTCATATAACATAGTAATAGTAATTAATAATAAGTTAGTATTTCTGAAATCACACCTGCTGTTCTAATGGCTTCTCCTCAGTCAGCTCTCGGTTGTACATGCTCTTATCTGGACCGTCGGGTCCGGCAGGTGTGGGAAACGCGCTGATCTGCGATATTACAACAAGGACAACCACAAACCCTGCGCTTTTTGACGCCATCCTTCAACTGGTTTCCGAATTGTCGTGTAGTTTCGAAATTTTTGTTTTCTCTTCTTTATCTGTGTTGTCTTCTGTGAAGATGAACTCGTCGTTGCTTTGGATTTGTGGAGCGCGCTTGTGTTGGCTGGATGCCGCGCGCTCTCAGCGCCTCTCTTCTATAAGCGCAAAGGCTTTAGTTCTGCGGGAGCTGTTGAGTCCCTGCAGTGCTGAAACCAGGTCGCTGACTATAATTAACAGCGGATAAGCTGATGGGAGCTCCTCGTGTATAACGGGCCCTGACTCCAGCAGCTCATGGATGGAGGAGGAGGACGGCACGGTCACATCCGCCCATGTGCGTCAGTCTAAAGCACCTGCGTCACGCGCGCATCTCACATTCATTCATGCTGCGGGGCAGTAAACGACCGATGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU169615 True 679 TUCP 0.48 2 6699513 6701240

Neighbor

gene id symbol gene type direction distance location
CI01000028_06681287_06690095 ACADL.L, ACADL coding downstream 9345 6681168 ~ 6690168 (-)
CI01000028_06565728_06571617 GLDN coding downstream 127491 6564707 ~ 6572022 (-)
CI01000028_06199637_06208451 NA coding downstream 490520 6198701 ~ 6208993 (-)
CI01000028_06092667_06094044 NA coding downstream 604918 6092188 ~ 6094595 (-)
CI01000028_06079297_06089526 SEMA6D, SEMA6DL coding downstream 609827 6079192 ~ 6089686 (-)
CI01000028_06736522_06738241 LYSMD2 coding upstream 35240 6736480 ~ 6738241 (-)
CI01000028_06756364_06785862 TMOD3, TMOD2 coding upstream 55103 6756343 ~ 6788590 (-)
CI01000028_06930121_06933901 BCL2L10 coding upstream 228583 6929823 ~ 6934781 (-)
CI01000028_06937034_06956621 GNB5B coding upstream 235578 6936818 ~ 6956621 (-)
CI01000028_06969947_06983352 NA coding upstream 267109 6965064 ~ 6984084 (-)
G149415 NA non-coding downstream 3470 6695840 ~ 6696043 (-)
G149414 NA non-coding downstream 4384 6694885 ~ 6695129 (-)
G149411 NA non-coding downstream 7906 6691397 ~ 6691607 (-)
G149405 NA non-coding downstream 39776 6659058 ~ 6659737 (-)
G149384 NA non-coding downstream 95328 6603966 ~ 6604185 (-)
G149426 NA non-coding upstream 24792 6726032 ~ 6726294 (-)
G149428 NA non-coding upstream 27008 6728248 ~ 6728482 (-)
G149429 NA non-coding upstream 40143 6741383 ~ 6741582 (-)
G149328 NA non-coding upstream 53099 6754339 ~ 6755285 (-)
G149331 NA non-coding upstream 95348 6796588 ~ 6798393 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other downstream 4253200 2441332 ~ 2445596 (-)
G146238 NA other downstream 4539475 2147378 ~ 2160038 (-)
G146190 NA other downstream 4588248 2097570 ~ 2111265 (-)
CI01000028_00474810_00475211 NA other downstream 6224167 473609 ~ 475211 (-)
G144855 NA other downstream 6563637 135392 ~ 137202 (-)
G149474 NA other upstream 528551 7229791 ~ 7232783 (-)
CI01000028_07527725_07535631 ARPP19 other upstream 824722 7525962 ~ 7535743 (-)
G149923 NA other upstream 1273328 7974568 ~ 8024244 (-)
G150328 NA other upstream 1992158 8693398 ~ 8693743 (-)

Expression


Co-expression Network