G149687


Basic Information

Item Value
gene id G149687
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 7569948 ~ 7618064 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU170008
CTGCTGTGTGACAAGGTGTACAGAAAACAAGCTAAAAAAAACCCAGATCCAAAAACCCAGAAGTTTTTATAAGCTGTCGACCCAAAAAACGAGCGTTTAAGGACTAAAAAGTGGATACAGGCGATTGAGACAGAGCACGACATGTCATATTACTATGAGAACTACGCCCACTGCAGGGTAACGTAATCAGCGACAGGAAATACAATATATAAAACTGACATTTGGATATTTGACTTAACAGTGACAAAATGTTTACTGCACACGTAGGCTTACTGAGTGTCAGGATCCCAAAATGTACCCATTCCTCCTGCTGATGCTTCACGTCTTATTGCCTGTATCGACTTTTGTCTCCTTAAAGGCTGGCTTTTACGGTTCGGTAGCTTATAAAAACTTAGTTCTGGGTTTTTTTTAGCTTGTTTGCTGTACACCTTGTAACACAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU170008 True 442 lncRNA 0.40 2 7569948 7618064

Neighbor

gene id symbol gene type direction distance location
CI01000028_07527725_07535631 ARPP19 coding downstream 34317 7525962 ~ 7535743 (-)
CI01000028_07424181_07428224 NA coding downstream 141399 7423965 ~ 7428549 (-)
CI01000028_07328793_07405548 MYO5A, MYO5AA coding downstream 163269 7328322 ~ 7406679 (-)
CI01000028_07257403_07298334 NA coding downstream 271614 7257177 ~ 7298334 (-)
CI01000028_07236259_07242539 NA coding downstream 327008 7236199 ~ 7242940 (-)
CI01000028_07627976_07631457 NA coding upstream 9708 7627772 ~ 7631539 (-)
CI01000028_07632826_07637377 ONECUT1 coding upstream 14543 7632607 ~ 7638167 (-)
CI01000028_07643341_07644823 NA coding upstream 24153 7642217 ~ 7645416 (-)
CI01000028_07885954_07890507 NA coding upstream 266560 7884624 ~ 7890507 (-)
CI01000028_08209464_08209781 NA coding upstream 589668 8207732 ~ 8209781 (-)
G149726 NA non-coding downstream 13038 7556380 ~ 7556910 (-)
G149720 NA non-coding downstream 45523 7524146 ~ 7524425 (-)
G149704 NA non-coding downstream 48643 7520686 ~ 7521305 (-)
G149714 NA non-coding downstream 62899 7506588 ~ 7507049 (-)
G149713 NA non-coding downstream 65977 7503771 ~ 7503971 (-)
G149738 NA non-coding upstream 40710 7658774 ~ 7659079 (-)
G149768 NA non-coding upstream 96651 7714715 ~ 7715050 (-)
G149769 NA non-coding upstream 97475 7715539 ~ 7715993 (-)
G149773 NA non-coding upstream 103533 7721597 ~ 7721870 (-)
G149474 NA other downstream 337165 7229791 ~ 7232783 (-)
CI01000028_06969947_06983352 NA other downstream 598051 6965064 ~ 6984084 (-)
G149329 NA other downstream 868708 6699513 ~ 6701240 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other downstream 5123635 2441332 ~ 2445596 (-)
G149923 NA other upstream 356504 7974568 ~ 8024244 (-)
G150328 NA other upstream 1075334 8693398 ~ 8693743 (-)
CI01000028_09469357_09494746 NA other upstream 1858781 9469343 ~ 9494746 (-)

Expression


Co-expression Network