G150926


Basic Information

Item Value
gene id G150926
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 9288983 ~ 9290591 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU171392
TCGCCATTTCACACCCGTCTCTCCCGGACGTCTCGGCGACCGCGCTTCCATCACGCGCCCCCTCTCTTCGGGACGACCATCTTTTGGCAACAAGTTTCTTTGTCAAACCCTCTTCATCCGTCGCCCTAAGTCTTCACTCTTCATCGCCTAGGAGACGGACTCTTTTTCTTTATTTTCCGGTTATCTTACTCTTAAGTTAAACCCTTGTTTGAAAATCCCGCCGAAGAACACCTTCTCGGAAAAGGACCAATCGCTTCAGCCGCACGCACCGAAACTCCTGCAGAAACACGAAACGACCACAGCACCTGAACCTATGCAAGTATAGAACCATTCTTTCCAAAGCGTTTTAAGCTCGATGTGTAAGCTGAGTTTCCTTGCTGGCTCTCAAAGGTTTTAACTGTTCGTAAGTTGCCATTCCTTTGATCACCTCTGTTTTCTTGACTTTACTTTCGCTTTCTATATATGTGTATTGTTTGTGTATGTTTAGTAGTATAGTCTCTGTATCCGTAGTTTCATATATTAAATACATTATATTCATGCTCGATTGTTTTTTTTTGCTCATGCAACAAACCCAGGTCACTTTAACGTTTCGATCCAGTATCCTTGCTTTGCGCATTGATGCTAGAATAGGAAGTCTTTCTCGTGGCCAGAGAAAAACCTTCCTTTTATAATCGGCTATGAGGAGCTAACGGTTTGCTGGACAAACTAATAGTTTCTCTAAATTATTATCAAACCAGAACTAATCATATATGTGATTGATTATAATTCGTTGTGATTAATTCACAATATATGTATAATTCCCTCTCGGGTCGGTATATGTATTATAATAATCATAAAGCTTTATGATTTATTATATTCATATATTTCACCCATAAATTAATTAAATACCTGTACAGATTCGCTACATTGTGTTAGATAATAGTTTGTGTTAGAATAATCAAAAAGTCTCCTGTAGATTTTTAAAAAATTGTCTTGTGTTATGTGCTTATAAATTTTCACGATAGTTGGATATTCATATCCGCTAAAAGAGCTTATTACGACCCGAGTAAATGAACGCTGGATGATTCAGTTGCTCTGTCGTAAACTAAGTGACTCTTTTTAAAGTTCCCTATAAATTAATTAATAATTTCATTTGAGCTGATTTGTCTTACATCAACAAATATTTTTCGTCATATTTTCATTAACGAAATTAATACTAGTTTGAAC
>TU171393
TCGCCATTTCACACCCGTCTCTCCCGGACGTCTCGGCGACCGCGCTTCCATCACGCGCCCCCTCTCTTCGGGACGACCATCTTTTGGCAACAAGTTTCTTTGTCAAACCCTCTTCATCCGTCGCCCTAAGTCTTCACTCTTCATCGCCTAGGAGACGGACTCTTTTTCTTTATTTTCCGGTTATCTTACTCTTAAGTTAAACCCTTGTTTGAAAATCCCGCCGAAGAACACCTTCTCGGAAAAGGACCAATCGCTTCAGCCGCACGCACCGAAACTCCTGCAGAAACACGAAACGACCACAGCACCTGAACCTATGCAAGTATAGAACCATTCTTTCCAAAGCGTTTTAAGCTCGATGTGTAAGCTGAGTTTCCTTGCTGGCTCTCAAAGGTTTTAACTGTTCGTAAGTTGCCATTCCTTTGATCACCTCTGTTTTCTTGACTTTACTTTCGCTTTCTATATATGTGTATTGTTTGTGTATGTTTAGTAGTATAGTCTCTGTATCCGTAGTTTCATATATTAAATACATTATATTCATGCTCGATTGTTTTTTTTTGCTCATGCAACAAACCCAGGTCACTTTAACGTTTCGATCCAGTATCCTTGCTTTGCGCATTGATGCTAGAATAGGAAGTCTTTCTCGTGGCCAGAGAAAAACCTTCCTTTTATAATCGGCTATGAGGAGCTAACGGTTTGCTGGACAAACTAATAGTTTCTCTAAATTATTATCAAACCAGAACTAATCATATATGTGATTGATTATAATTCGTTGTGATTAATTCACAATATATGTATAATTCCCTCTCGGGTCGGTATATGTATTATAATAATCATAAAGCTTTATGATTTATTATATTCATATATTTCACCCATAAATTAATTAAATACCTGTACAGATTCGCTACATTGTGTTAGATAATAGTTTGTGTTAGAATAATCAAAAAGTCTCCTGTAGATTTTTAAAAAATTGTCTTGTGTTATGTGCTTATAAATTTTCACGATAGTTGGATATTCATATCCGCTAAAAGAGCTTATTACGACCCGAGTAAATGAACGCTGGATGATTCAGTTGCTCTGTCGTAAACTAAGTGACTCTTTTTAAAGTTCCCTATAAATTAATTAATAATTTCATTTGAGCTGATTTGTCTTACATCAACAAATATTTTTCGTCATATTTTCATTAACGAAATTAATACTAGTTTGAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU171392 False 1206 lncRNA 0.37 2 9288983 9290591
TU171393 True 1206 lncRNA 0.37 2 9288983 9290591

Neighbor

gene id symbol gene type direction distance location
CI01000028_09224491_09231508 NA coding downstream 57138 9223805 ~ 9231845 (-)
CI01000028_09159785_09161996 NA coding downstream 126167 9159749 ~ 9162816 (-)
CI01000028_09097962_09100854 NA coding downstream 188129 9097962 ~ 9100854 (-)
CI01000028_09035121_09057360 NA coding downstream 231018 9034579 ~ 9057965 (-)
CI01000028_09019298_09021471 NA coding downstream 265893 9017345 ~ 9023090 (-)
CI01000028_09326092_09330464 NA coding upstream 35256 9325847 ~ 9330507 (-)
CI01000028_09331581_09331760 NA coding upstream 40748 9331339 ~ 9331886 (-)
CI01000028_09340262_09347554 NA coding upstream 49358 9339949 ~ 9347720 (-)
CI01000028_09449656_09453949 NA coding upstream 158512 9449103 ~ 9453949 (-)
CI01000028_09463027_09468717 NA coding upstream 171783 9462374 ~ 9468717 (-)
G150886 NA non-coding downstream 53936 9234838 ~ 9235047 (-)
G150885 NA non-coding downstream 54467 9234224 ~ 9234516 (-)
G150877 NA non-coding downstream 68357 9220417 ~ 9220626 (-)
G150876 NA non-coding downstream 69778 9218974 ~ 9219205 (-)
G150869 NA non-coding downstream 76196 9212588 ~ 9212787 (-)
G150937 NA non-coding upstream 13738 9304329 ~ 9304554 (-)
G150938 NA non-coding upstream 16910 9307501 ~ 9307841 (-)
G150943 NA non-coding upstream 23257 9313848 ~ 9314658 (-)
G150953 NA non-coding upstream 43176 9333767 ~ 9333977 (-)
G150328 NA other downstream 595240 8693398 ~ 8693743 (-)
G149923 NA other downstream 1264739 7974568 ~ 8024244 (-)
CI01000028_07527725_07535631 ARPP19 other downstream 1753240 7525962 ~ 7535743 (-)
G149474 NA other downstream 2056200 7229791 ~ 7232783 (-)
CI01000028_06969947_06983352 NA other downstream 2317086 6965064 ~ 6984084 (-)
CI01000028_09469357_09494746 NA other upstream 186254 9469343 ~ 9494746 (-)

Expression


Co-expression Network