CI01000029_03503783_03509429 (NUS1)


Basic Information

Item Value
gene id CI01000029_03503783_03509429
gene name NUS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3503663 ~ 3509429 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_03503783_03509429.mRNA
GGTTCCTGAGACACTGGTCCATTTGGAAGGGGAACAACATTGACACAATACATAAATGTGAGCTGAGGCCTCACAGGCGACTACAGGTGTTAAATCTGCGCCACAACAAACTCTCCACTCTTCCTGCATTGAACCTACCAAAAATAAAACTTCTGTATTTGGATAGAAACCCATGGCAGTGCAGCTGTGAACTCCTTGAGGTCGAAATCAGGCCTGATCTCTGCAGCAAGCCTGTCTATGCATCTCTTGATGATGAATGGCGAGTGTATGAATTGGCACAAGATATCTGTGAGGAGGAGACCAAGGATTTTTTGTTAGAGAGCCAAGCTGAACACATAGACAATGAGGAATATGCCGTCAAGAGTTCTTCTCTCGCCTTAACACTTACCAAGGCAGACATCATAGCTGATCCCAGACCAGCTGATAGAATGACGCGCAAACGCTCTGTCAGCCGTCCAATCAGTGAGCTCCATGTCACACAGCAGCAGGTTCAGAGTGGAAAGAAAAAGGCTGGACCCATAGGCAAACGGACCAGCCGCCGGGTTCGCTGGGGAGCCGACGGCAGGACGATAGAGAAGCTGCCCCTTCATGTGGGGTTATTGATCACTGAGGAGGAGATACACTATTCTGACATTGCCAATCTAGTGGTCTGGTGCATGGCAGTGGGCATCTCATATGTCAGTGTTTATGATAATCAAGGTGTCTTCAAGAGGAATAACTCCAGACTCATGGAGGAGATCCTGAAAAAACAGCAGGAGTTTTTGGGAATGGACAGCTCCAAATACTCAGTGGAGTTGTTGAAGAATGGTACAGATAAACAAGAGCATCAAGTGTTATCTTGTCAGTCAGTGGTCAAGGTCTTCTCTCCAGACGATGGGCGGCTCAGTATCGTCCAGGCAGCCCAGCAGCTCTGTAGGGCCGTCGAGCAGAGGGAAAGGACATCCAAAGACATTGATGTCACTGTGCTGGACTCATTACTCAGAGAGTCGAAGAACATACCTGACCCAGACCTGGTGCTGAAGTTCGGTCCTGTGGAAAGCACACTTGGTTTTCTTCCCTGGCACATCAGACTAACAGAGATTATGTGAGTATGTTTATATATGGATGGATTTCAGCACAAACTGTACAGAATACAGGCAAGGTCTTGAAGTTCTTGAGTCCACATTGAAAAACTCGAATTTAAAATTAAATTTAAACCTAGAAATAAA

Function

symbol description
nus1 Predicted to enable transferase activity, transferring alkyl or aryl (other than methyl) groups. Predicted to contribute to dehydrodolichyl diphosphate synthase activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of dehydrodolichyl diphosphate synthase complex. Predicted to be active in endoplasmic reticulum membrane. Is expressed in blastomere; brain; notochord; and trunk. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 55 and congenital disorder of glycosylation Iaa. Orthologous to human NUS1 (NUS1 dehydrodolichyl diphosphate synthase subunit).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
K19177 NUS1; dehydrodolichyl diphosphate syntase complex subunit NUS1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_03503783_03509429.mRNA True 1208 mRNA 0.47 6 3503663 3509429

Neighbor

gene id symbol gene type direction distance location
CI01000029_03397097_03444565 SLC35F1 coding downstream 59098 3396139 ~ 3444565 (-)
CI01000029_03382508_03395312 NA coding downstream 108351 3382350 ~ 3395312 (-)
CI01000029_02957572_02962601 NA coding downstream 540309 2957427 ~ 2963354 (-)
CI01000029_02837412_02857934 NA coding downstream 645723 2836763 ~ 2857940 (-)
CI01000029_02764957_02770946 HSDL1 coding downstream 732270 2764957 ~ 2771393 (-)
CI01000029_03534096_03563671 NA coding upstream 24623 3534052 ~ 3563671 (-)
CI01000029_03590053_03594170 VGLL2, VGLL2A coding upstream 80224 3589653 ~ 3594904 (-)
CI01000029_03625037_03636215 RFX6 coding upstream 115275 3624704 ~ 3637033 (-)
CI01000029_03698769_03707177 NA coding upstream 189143 3698572 ~ 3707883 (-)
CI01000029_03723621_03726874 NA coding upstream 213758 3723187 ~ 3727070 (-)
G153952 NA non-coding downstream 145308 3348381 ~ 3358355 (-)
G153985 NA non-coding downstream 192682 3310710 ~ 3310981 (-)
G153373 NA non-coding downstream 454334 3049059 ~ 3049329 (-)
G153333 NA non-coding downstream 589432 2912932 ~ 2914231 (-)
G153299 NA non-coding downstream 627867 2875591 ~ 2875796 (-)
G154017 NA non-coding upstream 64635 3574064 ~ 3574456 (-)
G154040 NA non-coding upstream 124556 3633985 ~ 3634543 (-)
G154046 NA non-coding upstream 178423 3687852 ~ 3688128 (-)
G154047 NA non-coding upstream 178798 3688227 ~ 3688470 (-)
G154057 NA non-coding upstream 226802 3736231 ~ 3740719 (-)
G153891 NA other downstream 217109 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 910861 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 2209540 1292249 ~ 1294123 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 950914 4460159 ~ 4463540 (-)
G154415 NA other upstream 1476679 4986108 ~ 4990990 (-)
G156542 NA other upstream 3660938 7170367 ~ 7170951 (-)
G156495 NA other upstream 3856898 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018328 NA non-coding NC_007131.7 CM002904.2 42220734 ~ 42241456 (-)