CI01000029_04046704_04057783


Basic Information

Item Value
gene id CI01000029_04046704_04057783
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4046646 ~ 4058256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04046704_04057783.mRNA
ATCGTTCTGAAATAAATAAGTGCACATTCTTGATCACACACTTCCTGAAGTAAACGTGAATGGTACTTGCCTGCGCTAAACTTGCTGCCAAGACATTAGCAGTTTGTGGGTAGTTGCTACAAGGGTGTTGCTAGGAGGTGACTAGGGTGTTCTGGTTGTTCATTCACTATGTGAAAATAGTCTGATTGCTTAGAAAATAAGTTTAATACTTAAAGTTGGGGATTTCTACAAACACCTAAACCTAAGCAAGTAAGGCTTGCCTTAGCAAGCACCACTAATGTTGTTTCACGTTAGGAAAATGAGGAAAAACCAGACAGAGAAATATGGGTAGACTTATTGAACACATTGACCATATGGTCACCATGGATGTAGGCCTACTGTCATAGCTAATCACAGATAAAGCTAGTCACAGAGCCACAGTCTTTATCTACAAAATAGTGCATCACATTAATGGAAATGAAAAGTAAAAAAAAATGAGTGCTTTTCATGCAGCTTCATTACTGGGAGAGGATGAGATTTTACTGTGGACTGTGGTCTATGCGGTAGGCCCCACACCAGCCTGCGGCTTTCCTACTGTGAGTGAACGGAAAGTAGCGTCCTTGTTTGGCGTGAAGTCCGGCTTTGGACCGCTGGACGCCGAGTTGTTTGTGAGTGTGGGAGCTGATATTCTTATGCCCATGGCTGTCCCGGAACCTGTTGCCACCCGGAGGTTGGCACTGGACTGTCGTACCCTGCTGGATCACCGCCCGAGCCGTGCTGCATCTAAGACGCTGCAGGGAAGGATTGAGAAGAGAGAGAGCACCTTCACTGACATCAAGAGCGATGTATGGTAAGCGCTAAGCTTGTCTGTGTGTGTGTGTGTGTGTCCTGGAGGCTTTTGTGCATAATAAA

Function

NR:

description
PREDICTED: protein EFR3 homolog B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04046704_04057783.mRNA True 891 mRNA 0.45 4 4046646 4058256

Neighbor

gene id symbol gene type direction distance location
CI01000029_04017725_04032225 EFR3BB, CCL33.2, EFR3B coding downstream 14421 4017193 ~ 4032225 (-)
CI01000029_03988871_03998768 NA coding downstream 47878 3988590 ~ 3998768 (-)
CI01000029_03949550_03958610 NA coding downstream 87902 3949306 ~ 3958744 (-)
CI01000029_03942459_03946094 NA coding downstream 100552 3942436 ~ 3946094 (-)
CI01000029_03927561_03936968 NA coding downstream 109678 3927499 ~ 3936968 (-)
CI01000029_04071708_04075046 NA coding upstream 12468 4070724 ~ 4075299 (-)
CI01000029_04108560_04110587 MIXL1 coding upstream 50142 4108398 ~ 4110871 (-)
CI01000029_04115189_04121331 NA coding upstream 56907 4115163 ~ 4121331 (-)
CI01000029_04122433_04123725 TTC32 coding upstream 63952 4122208 ~ 4123725 (-)
CI01000029_04125071_04135324 MATN3, MATN3A coding upstream 66485 4124741 ~ 4135374 (-)
G154137 NA non-coding downstream 44171 4002176 ~ 4002475 (-)
G154057 NA non-coding downstream 305927 3736231 ~ 3740719 (-)
G154047 NA non-coding downstream 358176 3688227 ~ 3688470 (-)
G154046 NA non-coding downstream 358518 3687852 ~ 3688128 (-)
G154040 NA non-coding downstream 412103 3633985 ~ 3634543 (-)
G154144 NA non-coding upstream 3926 4062182 ~ 4062422 (-)
G154146 NA non-coding upstream 6316 4064572 ~ 4064850 (-)
G154147 NA non-coding upstream 10332 4068588 ~ 4068822 (-)
G154148 NA non-coding upstream 10997 4069253 ~ 4070441 (-)
CI01000029_03698769_03707177 NA other downstream 339394 3698572 ~ 3707883 (-)
G153891 NA other downstream 760092 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 1453844 2587549 ~ 2592379 (-)
CI01000029_01293143_01293964 BATF3 other downstream 2752523 1292249 ~ 1294123 (-)
CI01000029_04460778_04463540 FKBP1B other upstream 402087 4460159 ~ 4463540 (-)
G154415 NA other upstream 927852 4986108 ~ 4990990 (-)
G156542 NA other upstream 3112111 7170367 ~ 7170951 (-)
G156495 NA other upstream 3308071 7365007 ~ 7371921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location