CI01000029_04213048_04215977


Basic Information

Item Value
gene id CI01000029_04213048_04215977
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4213048 ~ 4216310 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04213048_04215977.mRNA
ATGGCTGCGTGCTGGCTGATGGTGCCAAGCCAAACCCAGCGCAGCGCAGCCGGAGGAAGTGAGGACAGAGGCGGCTGCACAAGCTCATTGGCCGGCGCGGCGCTGTTTGTTGTTGCTGGGGTGATTACTAAGGAGAAAAATGTACCTGTCGCACAAAAACCCGGCAAAATAACTCAGTGGTACCTCAATGGTTCATGCTCAGATCGCTCATCCAGTGAAGTCCGTGACCATGAGCATGCAGGAATGTGGAAAACACATATAACATTTAATAGTTTAGAAAATGTCTCAGCAGAGTGTACAACAAAAGTTAACAGAATTCTCTCACATGATCACAGAAAAGACGTCCTCGCACTTCTCCAAAGTTCTGGACGAGCTTTAATCATGGCCACAAACGTCCAAGAAAACATATATGAACAAATCAACGAGAGGACCGAAAACATATATGAGAAGCCATATGAGAAGCCGTATGAGAATATAAACAGTGACACAGAGCCGAAATATGAGAATCAAGACGCGCATGAGGAACCGATCTACAGCACTCCAGACTACATGGATATGAGAGAAACAACTGAGGAAGACGCTCAGCTTTCACCCTCCAGTGAACGAGGAGAGCAGCTCGAAAGCGAGATAATGGTGGCGTCTCTGCAGAATGGAGATGGATACGGGTCTGGAAGGTCTTCATCTTTAGAGGGAACTGGAGACCCTTGTGATGACCAGCCCTCACTGGTCCACGAAGACCTGCTTATGGCTTACAGTCTCCCAGAAGACACATCTCCAGAACCTGAGGAGGTAGTTGACTACAGCTTGAAGAACGTGGAGAACAGCGACGTGGAGACCACTGCGGTTACCGACCCTACCCAGCCTGAAATCGCGCTTTTTGTCAAGGTAAAGGCTGTTGGTTTATTTAGGGCTGCATTTATGACAACTGCATAACATAACCAGAACTTTTTTAGCTTATTTTAAAGAAAATATTAAAGTTGGCGTTAATATATTTTAGAGTCTAAAGGTCAGTTGGGTGTGGTTTGTGATAGTGATGTGGTTTGTCATATTTCTGCTTACCTTTGACCATATAAGACGGTGTGAAGACAAAATGAATGTCAATTATTCACTTGATCATTTTTATGCTGAAACCCTATTTTACCTACTAAATTATTATAGGTTACTCTAATCTTATATCTTTTAATAACGCATAACAAATTCAATTTTAGTATATAAACTCAGATGTTAAATACTTATAATTCTATATTTTATTTTATGCCAAATTAA

Function

NR:

description
chloride intracellular channel protein 5, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04213048_04215977.mRNA True 1266 mRNA 0.42 3 4213048 4216310

Neighbor

gene id symbol gene type direction distance location
CI01000029_04143243_04143794 NA coding upstream 68997 4143243 ~ 4144051 (+)
CI01000029_04099307_04107542 LIN9 coding upstream 105501 4099307 ~ 4107547 (+)
CI01000029_04076167_04079831 NA coding upstream 133084 4075796 ~ 4079964 (+)
CI01000029_04060211_04069639 NA coding upstream 142588 4058738 ~ 4070460 (+)
CI01000029_04007545_04011744 NA coding upstream 201040 4007545 ~ 4012008 (+)
CI01000029_04223968_04232159 CLIC4, CLIC5, CLIC5B coding downstream 7234 4223544 ~ 4232309 (+)
CI01000029_04253844_04257502 NA coding downstream 37416 4253726 ~ 4257678 (+)
CI01000029_04389599_04399047 OPN8A coding downstream 173289 4389599 ~ 4399065 (+)
CI01000029_04409794_04419021 OPN8B coding downstream 193484 4409794 ~ 4419021 (+)
CI01000029_04478628_04483582 NA coding downstream 260110 4476420 ~ 4483601 (+)
G153605 NA non-coding upstream 70927 4141904 ~ 4142121 (+)
G153602 NA non-coding upstream 77541 4124759 ~ 4135507 (+)
G153600 NA non-coding upstream 92827 4119885 ~ 4120221 (+)
G153598 NA non-coding upstream 94123 4118531 ~ 4118925 (+)
G153589 NA non-coding upstream 139414 4073193 ~ 4073634 (+)
G153645 NA non-coding downstream 43008 4259318 ~ 4259607 (+)
G153646 NA non-coding downstream 43600 4259910 ~ 4260205 (+)
G153647 NA non-coding downstream 43991 4260301 ~ 4260539 (+)
G153649 NA non-coding downstream 48637 4264947 ~ 4265213 (+)
G153651 NA non-coding downstream 51437 4267747 ~ 4268078 (+)
G153475 NA other upstream 651044 3545125 ~ 3562004 (+)
G152451 NA other upstream 1450109 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2685149 1526754 ~ 1527899 (+)
G151495 NA other upstream 3841126 366541 ~ 371922 (+)
G151415 NA other upstream 3987803 170521 ~ 225245 (+)
G153790 NA other downstream 517279 4733589 ~ 4740107 (+)
G154587 NA other downstream 1054710 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1240931 5461497 ~ 5470346 (+)
G155079 NA other downstream 2066375 6282685 ~ 6288398 (+)
G155083 NA other downstream 2215225 6431535 ~ 6490294 (+)

Expression


Co-expression Network