CI01000029_07346183_07362585 (RBM25.S, RBM25, RBM25B)


Basic Information

Item Value
gene id CI01000029_07346183_07362585
gene name RBM25.S, RBM25, RBM25B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7346065 ~ 7362585 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_07346183_07362585.mRNA
GTGGGTGTTTTGCCCAAGATGTCTTTCCCTCCTCATCTCAACCGGCCACAAATAGGCATCCCAACGATGCCACCAGGAATCCCTCCACCACAGTTTGCTGGATTTCCACCATCGATGCCTCCCGGAACCCCAATGATTCCTGTCCACATGGGGATTATGACTCCTGCCCCTACGGTTCTTGTGCCCACGACGATGTCTGTGGTTAGTAAAATGCCTGCTCCCAGGAAGGAAAGTGCGGCTGCTAGGGCAAAAGATGACGATGACAACAGCGGTCCCACAACCACTGTGTTTGTGGGGAACATCTCTGAGAAAGCCTCTGACATGCTCATCAGACAGCTGCTGGCCAAATGTGGTTTGGTGTTGAGCTGGAAACGAGTTCAAGGCGCCTCAGGGAAACTCCAAGCGTTTGGTTTCTGTGAGTACAAAGAGCCAGAATCTACTCTACGAGCTCTACGGCTGCTACATGAGCTGCAGATTGGAGAAAAGAAACTTCTGGTCAAAGTCGATGCCAAAACCAAAGCACAACTCGACGAGTGGAAAGCAAAGAAGAAGACCGCCAGTGAAAATGGAAATGGCAAGGCAGAGGACGCTGGTGAAGAGGAAGAGGAGGTTCTGGATGAAGAAACTAAGAAGCGGGACCAAATTGTTAAAGGTGCTATTGATGGCCTGATCCGGGAGTACTCAAGCGAGCTCAATGCTCCATCACAGGACGATGAGTCGAGTCGCCGCAAAAAGAGGAGAGACAAGAAGGGCGAGGATGACATCAATGCCATGGAAATGGAAGATGACAAAAGAGATTTGATTTCCAGGGAGATCAACAAATTCCGCGATACCCATAAGATGGATATATTGGCAAACTGCGCTGTGAGAGCTGTTGAAATGAGGCTAAAGCCGTGGGTGTCATGCTGGACTTCAGTGCGTTTCATAATCGCTCAGTCAGATCCTCCGAGGCCCGTGTCATCTGCAGTGGGAGAACAGAGTCGCGATAGAGACCGAGATAAGGAGAAGAAGCGCGATCGTGAGGAAGATGAGGAAGAGGCATACGAACGGCGCAAACTGGAGAGGAAGCTGCGAGAGAAAGAGGCGGCGTATCAGGAGCGTCTGAAGAACTGGGAGCTCAGAGAGAGGAAGAAAGCCAGAGACTACAGCAAGGAGACGGAGCGTGAGGAGGAACGCCGACGTGAAATGGCTAAAGAAGGGAAACGGCTAAAGGAGTTTCTGGAAGACTATGATGATGACAGAGACGACCCAAAATACTACAAGGGCAGCGCTCTTCAGAAGCGACTGCGGGACAGAGAGAAGGAGATGGAGCTGGATGAACGTGACAGGAAACGGGAGAAGGAAGAGCTGGAGGAGATCAGACAGAGGCTGCTAGCAGAAGGACATCCTGATCCAGACGCTGAGCTGCGCAGGATGGAGGAAGAGGCAGAACGTTTACGTCAGCCGCCCGTGAAGCCTGAGCCTGAGGAGGAGAGGGAACACAAACCCACTCGAGAAGAGCGAGACCGAGGCAGGGATCGAGATCGGCGTAAGGTACCCGTAGAAACTCATGCTCACATCCCCTCTGATGATGATGTAGAGGAAGGGGAGGATCTAGAGGATGAAGAGGAGTCTAAGCCCTGCCTCAAACCCACCATGCGGCCCATCATGGCCGCCCCCTCAGTGTCTTCAGCCAGCGGTAACGCCACTCCCAACACGCCCAGAGAAGAGTCGCCCTGCGGCATAATCATCCCTCACGAGAACTCGCCACCAGAGGTCCAGCTCCAGGATGAGAACCGCCCCAAGATCGGCCTTAGCCTCAAACTAGGTTCATCCGGTAGCCCGGGACAGCCCAGTGTAGCCAAACGGAAGAAGCTGCCGGTGGAAAGCGTCTTTAACCGCTTTGACGACGATGAGGTGGACGAGGCACCTCGGAAAAGGAAGCTGGTGCCTTTAGACTATGAGGATGAGGAGAAGGGAGCAGACTTGGGTGTGGTGGGCGGCGGCAAAGGAGTCAATACGGAAGAGAAGCGCAAACACATCAAGAGTCTGATCGAGAAGATTCCCACTGCCAAACCAGAGCTCTTCAACTACCCGCTCGACTGGTCCGTCGTCGACACGACACTTATGGAGAAGCGTATTCGACCATGGATCAATAAGAAGATTGTGGAGTACATTGGTGAAGAAGAAGCCACATTAGTTGACTTTGTTTGCTCCAAGGTGATGGCCCACAGTACACCACAAGGGATCTTAGATGACGTTGCGATGGTGCTGGATGAAGAGGCCGAGGTCTTCATAGTTAAAATGTGGAGGCTATTGATTTATGAAACTGAAGCCAAGAAGATTGGACTTGGGAAATGAACAAGCATTGAATGCAAATGAACTTTGCTTTTTACTTCCCGTTTGGGCTGGACAGCTCATCTAGGTTTAAAAACAACTTGGGAAACTCAGACCATTTCCAAACTTTGGAGTTAATAAA

Function

symbol description
rbm25b Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Orthologous to human RBM25 (RNA binding motif protein 25).
rbm25 Enables mRNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome and regulation of apoptotic process. Located in nuclear speck.

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process

KEGG:

id description
K12822 RBM25, S164; RNA-binding protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_07346183_07362585.mRNA True 2458 mRNA 0.52 17 7346065 7362585

Neighbor

gene id symbol gene type direction distance location
CI01000029_07332828_07336542 ATP6V1D coding downstream 9523 7332295 ~ 7336542 (-)
CI01000029_06921800_06922750 TMEM121A, TMEM121B, TMEM121 coding downstream 422950 6921281 ~ 6923115 (-)
CI01000029_06832914_06833074 NDUFB1 coding downstream 512991 6831854 ~ 6833074 (-)
CI01000029_06798103_06806327 EXTL3 coding downstream 539219 6798040 ~ 6806846 (-)
CI01000029_06739098_06769987 NA coding downstream 576078 6738533 ~ 6769987 (-)
CI01000029_07388885_07402311 SLC35B2 coding upstream 25659 7388244 ~ 7402678 (-)
CI01000029_07405933_07416452 NA coding upstream 42958 7405543 ~ 7416952 (-)
CI01000029_07419676_07421496 NA coding upstream 57050 7419635 ~ 7422668 (-)
CI01000029_07435007_07443830 TCTE1 coding upstream 72355 7434940 ~ 7443830 (-)
CI01000029_07455468_07464461 RNF8 coding upstream 92775 7455360 ~ 7464465 (-)
G156594 NA non-coding downstream 15459 7330245 ~ 7330606 (-)
G156588 NA non-coding downstream 28520 7316066 ~ 7317545 (-)
G156587 NA non-coding downstream 36045 7309798 ~ 7310020 (-)
G156584 NA non-coding downstream 54091 7287533 ~ 7291974 (-)
G156574 NA non-coding downstream 82784 7260720 ~ 7263281 (-)
G156495 NA non-coding upstream 2422 7365007 ~ 7371921 (-)
G156607 NA non-coding upstream 84968 7447553 ~ 7447796 (-)
CI01000029_07468989_07470230 NA non-coding upstream 103286 7465871 ~ 7471489 (-)
G156615 NA non-coding upstream 124430 7487015 ~ 7487242 (-)
G156507 NA non-coding upstream 137750 7500335 ~ 7502988 (-)
G156542 NA other downstream 175114 7170367 ~ 7170951 (-)
G154415 NA other downstream 2358640 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 2868853 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 3638813 3698572 ~ 3707883 (-)
G153891 NA other downstream 4059511 3248777 ~ 3286554 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location