CI01000029_07592969_07600728 (BROX)


Basic Information

Item Value
gene id CI01000029_07592969_07600728
gene name BROX
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7591057 ~ 7600728 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_07592969_07600728.mRNA
GTATCTGGTTCAGGTCGCCATGACTCACTGGTTCCACCGAAACCCTCTGAAATCCACAGCGCCCGTGTCCTTCAACCTGTACGGGGTGGCGTCCAGCCCCGCAGCCAATAAGATCTGCAATGACCTGAGAACGACGCGGGCCAGACTGCTGGACATGTTCACAGATGCCACGTGTACACCAGAGATAATGAAGAAATCCAGTGATGAATATTTCGCTCTTTTACAGGGATTCATTTTGCCGCTGGATGGTACCACACAAGAGAACAAGCTCCGGTTCATCCAGAACTTCAGATGGACCGACACTTTACAGGGAAACATCCCAAGTGCGCAGCAGGATGCGGTTTTTGAGCTGGTGTCTATGGCGTTTAATGTCGCCATCTGGTACACCAAGTTTGCCTCACGATTGGCTGGAAAGGAGAACATCACAGAGGATGAGGCCAAAGACGTTCACAAGAGTTTGAAAACCGCCGCTGGAATATTTAAAACCCTCAAGGAGACTCATATTCCTCGGCTCATCACTCCAGCAGAGAAGGGCCGAGACCTGGAGCCCCGAGTCATCGACACCTACATTGTGCAGAGTCAGGCCGAGGCTCAGGAGGTGACCATTGCCAGAGCCATTGAGCTGAAGCATAACGCCTCCCTCATCGCAGCGCTGGCATTCGAGACCGCAAACTTCTACCAAAAGGCCGATCACACTCTGAACACTTTGGATCCAGAATGCAGCAGTAAATGGAAGAAATACCTGCAGCTGAAGCAGCACTTCTACATGGCTTATGCGCACTGCTATCATGGACAGACTCTTCTTGCGGGTGATAAATGTGGAGAGGCCATCAGATCCCTGCAGGAGGCTGAGAAATGTTACTCGCGCGCTGAAGCCTTGTGTAAAGAGTACCGTCAGATGAAGGGTCCCGGCAGCACCGCCAAACCCTCGGAGCAGCTCTTCTTTAAGAAACTGGGCTCGTTCATCAAAAACACCCTGGAGAAATGCCAGAGAGAGAACGGCTTCATTTACTTTCATAAGGTTCCTGCTGAAGCTCCTGCTCTGGAGTTGAAGGCCAGTTATGGATTGGCTGAACCGACTCCATTTGAGCTCCCGGCTCTCAGCGCTCAGTGCACACCTGAAGTCTACGCCACCTTTGACCTTACCAGAGGATCGAAAGATGACAAGGCAAAAGCGAAGCATGATGAGGAGATCAAGCCAGTGAAGGAGCCGGATCTGAAGCCGCAGAAAGACACGGGCTGCGTCGTCTCTTAATCGCAGCGACGGACAGGTTCAGCATGATGTCCAGGATATCTAGAGGAGTCTGTAATCTTCAACACAACTGCTCTTCTTCGTGTCTCTGCTCAAATATATAACAATATAACATAGTGATATAACAGTGGCGTCTGTCTCGTGCTCGGATTCTGTTTAAGGTATTTTATCTACAAACGACAGATGTTATAATGAAGGATTGAGTGAGTTTGGTCATTAATCTGATGAAGAGTTAATCATCATAACCCAGATAATTAATCTGAATTACATGACCATTTAATACGCACTTGATTATCTTTCTGTAGTATTATACAGATTTTATTGAGATTTTGAAGGTTTATCGGGTCCACTGATTAGAGAATAACTTCTATAGGTCACTAAATTCATGTTTTCTCTTAATGTTTATAATTTGGCTCTTCATGTTGATGCTGGTAAATAAGACATTGTTCAACACAAATGCTAAAGTTTAACAGTCTTTAAACCAGGTACATTTCAGACAGAATTGTCATATTCCACCCCGTCTAAAGAAATAATTTGTGCATAAAGACAGTTCAACCATTTTAAGACCACAAATTTTCTGCATTAAGACATTGTTCTCAAAAGAAGTGAAATCATATATATATGGGGATATATAATATATATATATCCCCATCCCCTACAGTGGAAAAAAAATATAATGAAATAAACAAATATATTTTGATATTAAATTATAATATAAATATATTTAATATTATAATGTAATATTAAATATATTTATTTCATCAAATATATGTGTGTGTGTGTGTGTGTGTATATATATATATATAATTATTATTATTATTATTATTATTAATAATATTTTTTTTTTCCCACTGAAATATATTTCAACCAAAATATATTTATTTCATTTTATATATATATATATATATATATATATATATATATAAAATGTATTTAATTATATATTTTTTTCACTGTATATATATAATATATATAATATAATATTCTTGAAAATAATGTCTTAATGCAATAAA
>TU177703
ATTTTTTTCACTGTATATATATAATATATATAATATAATATTCTTGAAAATAATGTCTTAATGCAATAAATAGGGGTCCGAAAAACAGGCTTCATCCAACATATAATTTCTTGACTATTATTGTGAACTTCACTAAACAGATTATTACCTGTAACTCACTTTATACACATGAAATATCTGCTGTATGATTAATATTTGTTAGTGGGAGGAGAGGACAAGCACACTTTTATTTGGGTCGTGGTATAAAAGAAATGGAACGATATTTTAGTTCATGAAAACATCCCAGATCAGGGACTCGTCAACTAGGTAGCAGAACTAAACAGGGTGCTGTGACGTGCCATCTGATTATAATCTCACCATCTATAATATCAGCTTTCAGTGGACGTAGTTTCATATGTATATATATTTACAGTCATATTTTCAAGTCCAAGTAATCCAAATATGGATCGTAGTGAGGGTCGTGCTGGACAAAACTCATGTCTTGATACCATCTGCTGATTTTCCCAGTGGTTTTGTGCTGGTTTGATTTGATAGGCTGGTTGTTTATTTTCTGTACGTTCAACACTGATGTTTGTCCGAATAAGTTCAACCATCTTTACGTTAGTAAATGTGACACTGACAGGTGCTTAGAAAAACGTATGCACTTTCACACCGAACACACGCAGGTACAGAAATGATCACTAAGATTGTTGCAAAAACTGTATCGCGCTTGTTATTTCGCTCCCTAACTTTAATTCAGACATGACAGAACATTGAAAATCAAGAGTTCATGTAATTATTAAGGGTAAATGATTGTCAAATATTTTGCTGTATATTTATTTAACACAGTTCTGCAGAGAACAAGACTTGTCAAATGACACTCCAGGGTTGCGTTTAGTTTTTGTAATTATTTCTTTTTCCATCTATGCAGTTGTATGGATATGTATTCATCATCGAATATACTCACAGATTATGATGTCAACCTGTAACTCA

Function

symbol description
brox Predicted to be located in membrane. Orthologous to human BROX (BRO1 domain and CAAX motif containing).

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_07592969_07600728.mRNA False 2265 mRNA 0.40 12 7591959 7600728
TU177703 True 972 lncRNA 0.34 1 7591057 7592028

Neighbor

gene id symbol gene type direction distance location
CI01000029_07580435_07584666 NA coding downstream 6520 7580308 ~ 7585439 (-)
CI01000029_07518076_07533630 DISP1 coding downstream 58101 7517278 ~ 7533858 (-)
CI01000029_07507652_07510065 NA coding downstream 81894 7507552 ~ 7510065 (-)
CI01000029_07468989_07470230 NA coding downstream 120470 7465871 ~ 7471489 (-)
CI01000029_07455468_07464461 RNF8 coding downstream 127494 7455360 ~ 7464465 (-)
CI01000029_07615776_07640353 MIA3 coding upstream 14472 7615200 ~ 7640353 (-)
CI01000029_07810274_07813211 HLX1, HLX coding upstream 209250 7809978 ~ 7813211 (-)
CI01000029_07820703_07833528 RHPN1 coding upstream 219947 7820675 ~ 7834085 (-)
CI01000029_07836385_07847829 NAPRT coding upstream 235519 7836247 ~ 7847829 (-)
CI01000029_07850412_07853905 NA coding upstream 249452 7850180 ~ 7854017 (-)
G156504 NA non-coding downstream 77161 7503908 ~ 7514798 (-)
G156507 NA non-coding downstream 88971 7500335 ~ 7502988 (-)
G156615 NA non-coding downstream 104717 7487015 ~ 7487242 (-)
G156607 NA non-coding downstream 144163 7447553 ~ 7447796 (-)
G156628 NA non-coding upstream 40308 7641036 ~ 7698876 (-)
G156633 NA non-coding upstream 42555 7643283 ~ 7653741 (-)
G156659 NA non-coding upstream 117985 7718713 ~ 7719037 (-)
G156661 NA non-coding upstream 128238 7728966 ~ 7729205 (-)
G156736 NA non-coding upstream 329031 7929759 ~ 7930343 (-)
G156495 NA other downstream 222412 7365007 ~ 7371921 (-)
G156542 NA other downstream 421008 7170367 ~ 7170951 (-)
G154415 NA other downstream 2604534 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 3114747 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 3884707 3698572 ~ 3707883 (-)

Expression


Co-expression Network