CI01000029_08367350_08368348 (GPR6)


Basic Information

Item Value
gene id CI01000029_08367350_08368348
gene name GPR6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8366344 ~ 8368514 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_08367350_08368348.mRNA
GTTTAAAAGAATGAATAAAACCCTTTATTTTAGCATATGCATGAAGAAAATGCTTGTTGTAAGATTCAGCACCATGGACAGCTCCAATTGGTTTTCAGAGATTTCTTCATGCACATGAATTAGTGGAGCCTCTACATGACATTTATAGATTTTACTTGATGCATTTCCCAAACTATAAGAGCTTATGATGTTTAAAAGATGTTTATGCTCCAATAAAATAATTTATTTTGCCTTATGCATGAGGAAAATGCTTATTCTGTGATTCAGCTCCAATTGATTTTCATGCAAATGATACACTTGTCATTTATAGAGTTAGTTGATGAATTTTTCTAAACTAAGAAATTTAAAAGATGTTTATCCTCGAATAAAACTCTTTACTTCGGCATATGCATGAGGAAAATGCTTGTTCTGTGATTCAGGTCCAATTGGTTTTCAGAGATTTCTTCTTGCACATGAATTAGTGGAGTCTCTACACGTCATTTATAGATTTACTTGATGCATTTCCCAAACTATAAGAGCTTATGATGTTTAAAAGAGGTTTATGCTCAAATAAACTGCTTTATTTCAGCTTATGCATGAAGAAAATGCTCATTCTTAGATTCAGCACCAATTTTTATTTGCCAAGAATTGCAGAGATTTCTTCATGCAAATGATACACTGAAGTCTCTACGTCATTTATAGTTGATGAATTTTTCTAAACTAAGAAATTTAAAAGATGTTTATCCTCAAATAAAACTCTTTATTTCAGCTTATGCATGAAGAAAATGCTTGTTCTGAGATTCAGCACCAACTGATTTTCAAAGATTTCTTCTTGCACATGATTTAGTGGAGTCTCTACATGACATTTATAGATGTACTTGATGCATTTCCCAAACTATAAGAGCTTATGATGTTTAAAAGATGTTTATGCTCAAATAAAATAATGTATTTTGCCTTGTGCATGAGGAAAACACAACTGACTCCAATTGACTTTCATGCAAATTATATTTTGTGTCCAGGTTGAGAGATGAACGAGAGCGGAGCGCTCAATGAGAGCGCTGCGGGTCTGCCGTCGTCCTCATGGCTGGAAGCCGAAGCCTTCGATGGCAACCGCAGCCTGGCGCTCTCATCGGCGGCCCTGGATTTCCACGTGAACCCGTGGGACATCATGCTGTGCCTGTCGGGGACGGTGATCGCCTGCGAGAACGCCATCGTGGTGGCCATCATCTTCTACTCGCCAACGCTGCGTAACCCCATGTTCGTCCTGATCGGCAGCCTCGCCACCGCTGACCTCCTGGCCGGCATGGGATTAATCCTGAACTTTGCGTTCCAGTATCTGGTCTCGTCCGAGACCATCAGCCTTATCACGGTGGGATTCCTGGTGGCTTCCTTCACAGCGTCCATCAGCAGCCTGCTGGCCATCACGGTCGACCGCTATCTGTCACTGTACAACGCCTTGACGTACTTCTCCGAGAAGACGCTGCATTACGTGCACCTGATGCTGGTGGGAACGTGGGGTGCGTCGCTCGCCCTGGGACTGCTGCCCATTTTGGGCTGGAACTGCTTGGACGACGCGTCCACCTGCAGCATCGTGCGTCCGCTCAAGCGCACCAACCTCACCCTGCTGGCCGCGTCCTTCTTCGTCATCTTCGCCCTCATGCTCAGCCTGTACTTCAAGATCTGCAAAATAGTTTGTCGGCACGCGCACCAGATCGCGCTGCAGCAGCACTTCTTCACCACCTCGCACTACGTGGCCACCAAGAAGGGCGTCTCCACGCTCGCCATCATCCTGGGCACGTTCGGCGCCAGCTGGCTGCCGTTCGCCATTTACTGTCTGGTCGGGGAGCGCGAGTATCCGCAGGTGTACACGTACGCCACGCTGCTCCCCGCCACGTACAACTCCATGATCAACCCCATCATCTACGCCTACCGCAACCCCGAGATCCAGCGCTCCATTTACATGCTCTTCTGCGGCTGCTTTCAGAGCAACGGCTCGTACCGCTCCAGATCGCCCAGCGAGGTGTAGATCTTTGCTTTTCAACCCTGGAACAGTTTATCCAACCTTTAGACAACATTTTTTTTGTTGCTGTTGAGCATCATATTTGATACATCAGGCTTTTATGGCTAATATAGTCTGATATAGTGAGAGAAACAAACGCTAGAGGGCCAAACTTCAGTTTATATGCTCAAAA

Function

symbol description
gpr6 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

GO: NA

KEGG:

id description
K04313 GPR6; G protein-coupled receptor 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_08367350_08368348.mRNA True 2171 mRNA 0.45 1 8366344 8368514

Neighbor

gene id symbol gene type direction distance location
CI01000029_08346604_08357224 NA coding upstream 8711 8346401 ~ 8357633 (+)
CI01000029_08318488_08338631 NA coding upstream 26985 8318488 ~ 8339359 (+)
CI01000029_08288440_08301175 NA coding upstream 64987 8288440 ~ 8301357 (+)
CI01000029_08198433_08203489 NA coding upstream 162806 8198365 ~ 8203538 (+)
CI01000029_08156225_08174249 SLC22A23 coding upstream 191208 8155914 ~ 8175136 (+)
CI01000029_08425310_08441838 NA coding downstream 55283 8423797 ~ 8441847 (+)
CI01000029_08443106_08447917 CDC40 coding downstream 74444 8442958 ~ 8447917 (+)
CI01000029_08484998_08502958 NA coding downstream 116438 8484952 ~ 8503169 (+)
CI01000029_08506379_08516187 NA coding downstream 137865 8506379 ~ 8516305 (+)
CI01000029_08533907_08555317 PAK6 coding downstream 165393 8533907 ~ 8555969 (+)
G155720 NA non-coding upstream 117631 8248489 ~ 8248713 (+)
G155725 NA non-coding upstream 120854 8244999 ~ 8245490 (+)
G155723 NA non-coding upstream 123539 8242311 ~ 8242805 (+)
G155724 NA non-coding upstream 124716 8241175 ~ 8241628 (+)
G155722 NA non-coding upstream 125685 8240376 ~ 8240659 (+)
G155753 NA non-coding downstream 5520 8374034 ~ 8374329 (+)
G155757 NA non-coding downstream 9557 8378071 ~ 8378290 (+)
G155758 NA non-coding downstream 13071 8381585 ~ 8381784 (+)
G155769 NA non-coding downstream 14354 8382868 ~ 8384341 (+)
G155809 NA non-coding downstream 73626 8442140 ~ 8442351 (+)
G155627 NA other upstream 434167 7931480 ~ 7932177 (+)
G155522 NA other upstream 728510 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1458912 6905834 ~ 6908633 (+)
G155083 NA other upstream 1876050 6431535 ~ 6490294 (+)
G155079 NA other upstream 2077946 6282685 ~ 6288398 (+)
G156007 NA other downstream 596304 8964818 ~ 9064541 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017747 gpr6 coding NC_007131.7 CM002904.2 53278746 ~ 53279747 (+)
bowfin (Amia calva) AMCG00010897 NA coding CM030133.1 CM030133.1 3549465 ~ 3550451 (+)