CI01000029_08384203_08407906


Basic Information

Item Value
gene id CI01000029_08384203_08407906
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8382870 ~ 8407906 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_08384203_08407906.mRNA
GTAAATATGCGGAGGATTTGTTCGGAGAACTCTTTAATGAAGCTCATTCCTTCTCGTTCCGAGTGAACTCACTCCAGGAGAGAGTCGACCGCCTGTCAATCAGTGTCACTCAACTCGACCCGAAAGAGGAGGAGTTGTCTCTTCAGGACATCACGATGAGGAAGGCTTTCCGCAGCTCCACCATCCAGGACCAGCAGCTGTTTGAGCGTCAGTCTCTGCCCGTCCCGATGCAGGAGACGTACGAGCTGTGCGAACAACCTCCACCGCTGAACATCCTCACGCCCTACAGCTCATTTGCCATTTTAACCAGCAAACTCAAATTAATCGAGCGAAAACGAGAAAGAAAGTGTGATGAAGGAGAAAAACGTACAAAGTCAGAAAGCGAATGTGAGAAACAGAGGAGGGATGATGGGAAGGAAGGTCTGAAGTTCTACACCAACCCGTCGTACTTCTTCGACCTGTGGAGAGAGAAAATGCTGCAGGACACAGAAGACAAGAGGAAAGAGAGGCGGAAACAGAAGGAGAGATTCGCAGAGGAAACGTTTAACTACACAGACATTAACCATCAGGTGTCAGACTGCACAATCAATCGAAATCATGAGTGCGATTATCAAATCTTTATTCATGAAATAAACTTGCAGGATCCCCACATGTATGATCAGGTCTATAAATATTTAGACCTTCCAGTGCAGCTGAAGAACATCGACCGCCCTCATGACCCCGAGAAAGTCCCGCGGGCGCCTCACGACCGGAAGAAGGAGTGGCAGAAGATGGCGTTAGGGGCGGAGCTTGCTGATGACGACATGGAAGACAAACACAAAGACACGAACGGATCAGCAACGTACCATGACCACAGGCAAATGTACATCGATCATCTGGACGGGCCGTTCTCTCTGGCCGCGCTGCCGTACTCTCAGATGAACGAACTCCTGAGCCGTACGGGAGAGCGAACGTACGGCCGCCCGCACGACCCTCCGCCGCCGCCGCCCACGTACCCGCCCGACGTCAAACCAGCCTCCGTTATCAGGGATCCAGCTGAGGAAGGTGGAGGAGCAGCGGGAACAAGAGGCCAAACACGAGCGCGTGGGGAACGACGTGGCCACCATCCTGTCCCGCCGCATCGCTGTGGAGTACAGCGACTCCGAGGACGACTCCGAGTTTGATGAGGTCGACTGGATGGAATGAGAGAGAAACACAGACTTCAGGAAGGAGGCATAAAAACGGCACATGAAATCTCAGTTAACCTTCCTCTCCTAATAAGAGTTTCCCATAAACACTCCGATCAGTCGTAGTTCAATTCAGGAAACATCAGGACTGCAGACGGCTGTGTTTGATGTTCCCAGAATGCTTTGCTTTAATGTTTTTTATCCACATGTTCCACTTGTTGTGCAATTGATGAACAAAAATAACAATGTTGGAGGGTTTTTTTATCTGTCATACTTCTTTCATTCGAATCTGTCTGTCTTTAATTCTCAGTATGAACAACAAAACTGGTTCTTTTGTGGTTATTGTTCAGCGTGAGACGGACGGCAGCGACCTCTTCTGGTCACGACAGGAACGTCTCACGGATCCAAGGTTTCATATCAGAATGTGACGGATGCTTATTATACTTTATATATCATCAAAACCGTTCTTCCATTTCAGAGATGTGATGTTTGATGTCATTGTGCGGTTGTGATGGACAAAGTTAAAGAAAAAAAAATGAAGGAATGATTTTATTAAGGTGTCAAGAAGGAATAAA
>TU177945
TAAAATTATAAATATAATAAATAAATGAAATTAGTAAATTAATATATAATTAATAAAAACTATGGATGCAATAAGTGCAACTTAATTTAAATGTATAATTAATAAAAATATAAATGCAATAATATAATATATATAATATAATTAAAAATATAATTAAAAAAAATTTAATAAATAAATGAATATAATAAATTAGCATAATTTATTATTAATAATAAAAAAAAAAAACTAGATGCATCAGTCATTAACAAGTAGCAGTGCTGAAACTCAGATTGTGAGAGAAAAAGCAGATCTTATATGAGGAGTTTTGTGTCTCTCAGGGATCCAGCTGAGGAAGGTGGAGGAGCAGCGGGAACAAGAGGCCAAACACGAGCGCGTGGGGAACGACGTGGCCACCATCCTGTCCCGCCGCATCGCTGTGGAGTACAGCGACTCCGAGGACGACTCCGAGTTTGATGAGGTCGACTGGATGGAATGAGAGAGAAACACAGACTTCAGGAAGGAGGCATAAAAACGGCACATGAAATCTCAGTTAACCTTCCTCTCCTAATAAGAGTTTCCCATAAACACTCCGATCAGTCGTAGTTCAATTCAGGAAACATCAGGACTGCAGACGGCTGTGTTTGATGTTCCCAGAATGCTTTGCTTTAATGTTTTTTATCCACATGTTCCACTTGTTGTGCAATTGATGAACAAAAATAACAATGTTGGAGGGTTTTTTTATCTGTCATACTTCTTTCATTCGAATCTGTCTGTCTTTAATTCTCAGTATGAACAACAAAACTGGTTCTTTTGTGGTTATTGTTCAGCGTGAGACGGACGGCAGCGACCTCTTCTGGTCACGACAGGAACGTCTCACGGATCCAAGGTTTCATATCAGAATGTGACGGATGCTTATTATACTTTATATATCATCAAAACCGTTCTTCCATTTCAGAGATGTGATGTTTGATGTCATTGTGCGGTTGTGATGGACAAAGTTAAAGAAAAAAAAATGAAGGAATGATTTTATTAAGGTGTCAAGAAGGAATAAAATCTCTTGTTCAGGTCATATTTCACCCCACGACCAATCACAATCAAGAAATAAAATAAGAAATTAAATTTTGCATTAGGAAAATGAAACCTTTTTTTGGTTTTTGCATTGTGATATTATTTTCATGACAATTCAATCTTTTGTTTTGCAATTACAGTCATGATAATTTGGGCAAAACAAATATTTAAATGTCAAGAAAAATGTTCAAAAAAATATATCTAAAAAAATTATATTAAAAGTACATTATATATATATGTGTGTGTGTTCCCAAAAAGGCCTTAATTTTCTTTTTAGAAATGTCTTTTGGGGGTTAAATATGACCTGAACATTCATGAGATTCATCCATCAAAATACTGACACCTTCCCAAAAAGGTAAAAAACAAACCTGTGTGGCCTTTTTCTGGGGTCTATAAATTGTAATTTATTGCATTTCTCAGTTTTTAAACGAAAAAAAACAATAATAATTATTTGCCAAAACATGAGAACAGACCTGGTGACACTACAAAACAGACTTTGTAATCTTTATGTGCAAGAGATGAAATGAAACGGTTACAGTTCATCGTCTGTCGGTGTTCAGACTGAACGTTTGTTCCTCTTTCTTAGGCCTTATGGTTTGTATAAATGTTGATGAGTTGAATGTATTGTGCTGTTACTACTTTTGCCTGCATTTCTCCAGCATTCGCTGTTTCTATGTTCCAAATGGAAAAAAAGATTCAGAAACAAAGATTAAACATGATTTAAAATACTGTATACCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_08384203_08407906.mRNA False 1741 mRNA 0.48 9 8383625 8407906
TU177945 True 1786 lncRNA 0.33 1 8382870 8384655

Neighbor

gene id symbol gene type direction distance location
CI01000029_08250264_08262665 GATA4 coding downstream 120960 8250249 ~ 8262665 (-)
CI01000029_08237701_08245368 FDFT1 coding downstream 138257 8236195 ~ 8245368 (-)
CI01000029_08229070_08234969 CTSBB coding downstream 148656 8228965 ~ 8234969 (-)
CI01000029_08205518_08214627 NA coding downstream 168998 8205470 ~ 8214627 (-)
CI01000029_08185095_08190376 NA coding downstream 193249 8185029 ~ 8190376 (-)
CI01000029_08463083_08479077 NA coding upstream 55086 8462992 ~ 8479190 (-)
CI01000029_08568672_08576837 SLC25A29 coding upstream 159125 8566372 ~ 8577143 (-)
CI01000029_08606896_08609369 NA coding upstream 197600 8605506 ~ 8610176 (-)
CI01000029_08690880_08711534 PPP2R5CB, PPP2R5C.L, PPP2R5C coding upstream 282419 8690325 ~ 8711919 (-)
CI01000029_08713541_08717320 NA coding upstream 305282 8713188 ~ 8717320 (-)
G156727 NA non-coding downstream 2168 8380726 ~ 8381457 (-)
G156738 NA non-coding downstream 14333 8365066 ~ 8369292 (-)
G156902 NA non-coding downstream 19273 8364127 ~ 8364352 (-)
G156900 NA non-coding downstream 20403 8363011 ~ 8363222 (-)
G156899 NA non-coding downstream 20683 8362642 ~ 8362942 (-)
G156913 NA non-coding upstream 90352 8498258 ~ 8503179 (-)
G156919 NA non-coding upstream 109211 8517117 ~ 8517370 (-)
G156831 NA non-coding upstream 352839 8760745 ~ 8761214 (-)
G156947 NA non-coding upstream 372857 8780763 ~ 8781076 (-)
G156495 NA other downstream 1014078 7365007 ~ 7371921 (-)
G156542 NA other downstream 1212674 7170367 ~ 7170951 (-)
G154415 NA other downstream 3396200 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 3906413 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 4676373 3698572 ~ 3707883 (-)

Expression


Co-expression Network