Gene
RNA
| Item | Value |
|---|---|
| gene id | G153475 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 3545125 ~ 3562004 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU174291 | True | 1498 | TUCP | 0.45 | 7 | 3545125 | 3562004 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000029_03511828_03527110 | GOPC | coding | upstream | 16387 | 3511828 ~ 3528842 (+) |
| CI01000029_03499444_03499713 | NA | coding | upstream | 44939 | 3499193 ~ 3500186 (+) |
| CI01000029_03324084_03378615 | CEP85L | coding | upstream | 166510 | 3324084 ~ 3378615 (+) |
| CI01000029_03291762_03308373 | NA | coding | upstream | 236332 | 3291762 ~ 3308793 (+) |
| CI01000029_03266557_03286137 | NA | coding | upstream | 258980 | 3266483 ~ 3286145 (+) |
| CI01000029_03640782_03646346 | NA | coding | downstream | 78778 | 3640782 ~ 3646364 (+) |
| CI01000029_03649051_03684709 | IGF2R | coding | downstream | 87047 | 3649051 ~ 3684880 (+) |
| CI01000029_03689026_03697933 | SLC22A2 | coding | downstream | 127022 | 3689026 ~ 3698074 (+) |
| CI01000029_03708374_03721140 | NA | coding | downstream | 146370 | 3708374 ~ 3721140 (+) |
| CI01000029_03830894_03838298 | NA | coding | downstream | 267603 | 3829607 ~ 3838325 (+) |
| G153466 | NA | non-coding | upstream | 48603 | 3496291 ~ 3496522 (+) |
| G153430 | NA | non-coding | upstream | 54752 | 3396845 ~ 3490373 (+) |
| G153461 | NA | non-coding | upstream | 60746 | 3483944 ~ 3484379 (+) |
| G153449 | NA | non-coding | upstream | 88507 | 3454310 ~ 3456618 (+) |
| G153504 | NA | non-coding | downstream | 9147 | 3571151 ~ 3571432 (+) |
| G153505 | NA | non-coding | downstream | 9837 | 3571841 ~ 3572070 (+) |
| G153509 | NA | non-coding | downstream | 26698 | 3588702 ~ 3594323 (+) |
| G153513 | NA | non-coding | downstream | 40586 | 3602590 ~ 3602834 (+) |
| G153491 | NA | non-coding | downstream | 136478 | 3698482 ~ 3731627 (+) |
| G152451 | NA | other | upstream | 782186 | 2761594 ~ 2762939 (+) |
| CI01000029_01526863_01527414 | NA | other | upstream | 2017226 | 1526754 ~ 1527899 (+) |
| G151495 | NA | other | upstream | 3173203 | 366541 ~ 371922 (+) |
| G151415 | NA | other | upstream | 3319880 | 170521 ~ 225245 (+) |
| G153790 | NA | other | downstream | 1171585 | 4733589 ~ 4740107 (+) |
| G154587 | NA | other | downstream | 1709016 | 5271020 ~ 5271535 (+) |
| CI01000029_05461497_05468985 | BATF | other | downstream | 1895237 | 5461497 ~ 5470346 (+) |
| G155079 | NA | other | downstream | 2720681 | 6282685 ~ 6288398 (+) |
| G155083 | NA | other | downstream | 2869531 | 6431535 ~ 6490294 (+) |
