XLOC_000877 (trip10b)


Basic Information

Item Value
gene id XLOC_000877
gene name trip10b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58922027 ~ 58935898 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001377
ATGGATTGGGGTTCAGCTCTTTGGGACCAGCATGACGCCATCGAGCGACACACTCAGAGCGGGCTGGATCTGCTGGAGCGATACATGAAGTTTGTGAAGGAGAGAGCCGAGATCGAGCAGAACTACAGCAAACAGCTCAGGAATCTCTGTAAGAAATACACCAGAAGAGGCAGCAAAGAGGATCAGGACACAAAgctgGTCAGTCAGCAGGGCTTTCAGGATGTGTTGGGTCAGCTGAATGACTATGCGGGTCAGCGTGAGCAGCTGTCGGAGAGTCTGACGGTCAGCATCTGCGTGGAGCTCAGCCGCAGCCTGACCGAGCTCAGACAGGAGCGCAAGAACCATCTCGCTGAAATCAAGAAGGCTCAGCAGAATCTGGAGAGCTCCTTCAAGCAGCTGGAGAGCAGTAAAAGGCGTTTCGAGAAGGAGTGGAAAGAAGCAGAAAAGGCCAATCAGCAAACAGAGAAAGTGGAGCAGGACGCCAGCGCCACAAAAGCAGATGTggacaaggCAAAGCAGCACGCAAACGTCCGCATCCACTTTGCAGATGAGTGTAAAAATGAATACGCTTCACAGCTGCAGAAATACAACAAGGAGCAAAACAACTACTACTACGCCGACATCCCCTTTGTGTACAAGAAGCTGCAGGATCTGGAGGAGCGCTGCGTCCGCATGCTGGCCGACGGCTACGTTCAGTTCTCTGACAGCGAGAAGAAGATCCTGCCCAACATCAACAAGTGTCTGGACAGCATCATCAGCAGCGGCCGGAGGATCGACGAGAAACAGGACACTCTGGCCCTCATCGAGCAGTACAAGTCAGGTGcggttcctcctgctgatgtgGAGTTTGAGGATTTCAGTCAGGCGGTCAAACCTGCAGCGGCTGAAAACACTGCACACCTGCCTAAAGTGCGCATCAAACAGCTGTTCCTGAAGAAGAACAagGTGACGTCTCCTGATAAACCCATGccgtGTTCGCAGGAGGATCTCTCTCGTCTTCCTCCAGATCAGCGGCGCCGGCGACTGCAGGAGAAAGTGGAGGAGGTGCAGAAGGAGCTGCAGAAAGAGCTGGAGCAGAgNNNNNNNNNNNNNNNNNNNNNNNGTGTGTATGAGCAGAACTCACAGCTCGGAGATACAGCCAGCCTCCAGCCGCAGATCACACAAACTGCACACAACATCGCCAGACTGAGAGGAGAACTGAAGAAACagcagGTTCAGCTTACTGAAGCTGGTGGTGGGACAATCAAGTATTACCCCTCCAGctctgAGTATATCTCCGTGTTGAGCGAGAGCAGTGTGTCTCCCACAGATGAGGAGCTGTACGAGTGTGACTTTGATGAGGACTTTGACTCGGACATGCCCATCGCTCAGTGCCGTGCGCTCTATGATTTTGACGGT

Function

symbol description
trip10b Predicted to act upstream of or within actin cytoskeleton organization; endocytosis; and signal transduction. Predicted to be located in cell cortex; lysosome; and plasma membrane. Orthologous to human TRIP10 (thyroid hormone receptor interactor 10).

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0030036 actin cytoskeleton organization biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-969 Predicted to act upstream of or within actin cytoskeleton organization; endocytosis; and signal transduction. Predicted to be located in cell cortex; lysosome; and plasma membrane. Orthologous to human TRIP10 (thyroid hormone receptor interactor 10).

Ensembl:

ensembl_id ENSDARG00000100788

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001377 True 1398 mRNA 0.53 14 58922027 58935898

Neighbor

gene id symbol gene type direction distance location
XLOC_000876 NA coding upstream 67650 58853170 ~ 58854377 (+)
XLOC_000875 tmed1b coding upstream 71341 58840889 ~ 58850686 (+)
XLOC_000874 NA coding upstream 139735 58778053 ~ 58782292 (+)
XLOC_000873 CABZ01084617.1 coding upstream 177990 58735326 ~ 58744037 (+)
XLOC_000872 LO017784.1 coding upstream 240482 58677434 ~ 58681545 (+)
XLOC_000878 NA coding downstream 20168 58956066 ~ 58959457 (+)
XLOC_000879 NA coding downstream 39119 58975017 ~ 58976687 (+)
XLOC_000880 eri2 coding downstream 41364 58977262 ~ 58979451 (+)
XLOC_000881 thumpd1 coding downstream 46087 58981985 ~ 58985885 (+)
XLOC_000882 CABZ01083166.1 coding downstream 54223 58990121 ~ 59000239 (+)
XLOC_000871 NA non-coding upstream 252952 58646685 ~ 58669075 (+)
XLOC_000865 NA non-coding upstream 326260 58586353 ~ 58595767 (+)
XLOC_000864 NA non-coding upstream 336895 58577919 ~ 58585132 (+)
XLOC_000888 FP015850.1 non-coding downstream 195394 59131292 ~ 59131406 (+)
XLOC_000889 NA non-coding downstream 201985 59137883 ~ 59138594 (+)
XLOC_000893 NA non-coding downstream 226067 59161965 ~ 59162831 (+)

Expression


Co-expression Network