G153645


Basic Information

Item Value
gene id G153645
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4259318 ~ 4259607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU174482
TGAAAACGTTACAGCTAATGGAAAAATCATTAGTTTGACTCTGAGTGTAACTTCAGGACACTGCTGCATTGCACTCCGCCTTTGAACTTGCAAGCAATGTGACATATGTAAAAGTTAAAAGCTAGCATAATTCAACCTCCCAGGAAGTACAGCATTTGAGCAAACCATACCTTTTCACACAAAGCCAATTTGTCTACTAGAATTTTTTGTGACAAGCTAAATCCAGACAGTGATACTGACATAAATCCTGCTAGGGGAAATAAAATGGACAAAGATGTGCTTTGTGCGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174482 True 290 lncRNA 0.39 1 4259318 4259607

Neighbor

gene id symbol gene type direction distance location
CI01000029_04253844_04257502 NA coding upstream 1640 4253726 ~ 4257678 (+)
CI01000029_04223968_04232159 CLIC4, CLIC5, CLIC5B coding upstream 27009 4223544 ~ 4232309 (+)
CI01000029_04213048_04215977 NA coding upstream 43008 4213048 ~ 4216310 (+)
CI01000029_04143243_04143794 NA coding upstream 115267 4143243 ~ 4144051 (+)
CI01000029_04099307_04107542 LIN9 coding upstream 151771 4099307 ~ 4107547 (+)
CI01000029_04389599_04399047 OPN8A coding downstream 129992 4389599 ~ 4399065 (+)
CI01000029_04409794_04419021 OPN8B coding downstream 150187 4409794 ~ 4419021 (+)
CI01000029_04478628_04483582 NA coding downstream 216813 4476420 ~ 4483601 (+)
CI01000029_04521600_04521771 NA coding downstream 261993 4521600 ~ 4522751 (+)
CI01000029_04590418_04605290 NA coding downstream 330677 4590284 ~ 4605694 (+)
G153605 NA non-coding upstream 117197 4141904 ~ 4142121 (+)
G153602 NA non-coding upstream 123811 4124759 ~ 4135507 (+)
G153600 NA non-coding upstream 139097 4119885 ~ 4120221 (+)
G153598 NA non-coding upstream 140393 4118531 ~ 4118925 (+)
G153589 NA non-coding upstream 185684 4073193 ~ 4073634 (+)
G153646 NA non-coding downstream 303 4259910 ~ 4260205 (+)
G153647 NA non-coding downstream 694 4260301 ~ 4260539 (+)
G153649 NA non-coding downstream 5340 4264947 ~ 4265213 (+)
G153651 NA non-coding downstream 8140 4267747 ~ 4268078 (+)
G153654 NA non-coding downstream 10610 4270217 ~ 4270439 (+)
G153475 NA other upstream 697314 3545125 ~ 3562004 (+)
G152451 NA other upstream 1496379 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2731419 1526754 ~ 1527899 (+)
G151495 NA other upstream 3887396 366541 ~ 371922 (+)
G151415 NA other upstream 4034073 170521 ~ 225245 (+)
G153790 NA other downstream 473982 4733589 ~ 4740107 (+)
G154587 NA other downstream 1011413 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1197634 5461497 ~ 5470346 (+)
G155079 NA other downstream 2023078 6282685 ~ 6288398 (+)
G155083 NA other downstream 2171928 6431535 ~ 6490294 (+)

Expression


Co-expression Network