G153647


Basic Information

Item Value
gene id G153647
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4260301 ~ 4260539 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU174484
CTGGTTTGCAACATTTCCTGCTTTTGTTTCTTCCTCTTCTTCCCATCACTTCCTGTCCTCTCTCTATTTTTCAATCAAAAAAAATTAGAAAAAAGTGAAAAAAGATAATGGCTAGGTTTAAAATGACAATTAAGCACTAACGCATGATTTTGAGACATTAATAGTTATGCATGATGGAAGATTTGCTTCTTTCTGGGTTTGTCTCCCGTTCTGACGGCGATAGTCTCGACATTACAAAT

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 3A-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174484 True 239 lncRNA 0.36 1 4260301 4260539

Neighbor

gene id symbol gene type direction distance location
CI01000029_04253844_04257502 NA coding upstream 2623 4253726 ~ 4257678 (+)
CI01000029_04223968_04232159 CLIC4, CLIC5, CLIC5B coding upstream 27992 4223544 ~ 4232309 (+)
CI01000029_04213048_04215977 NA coding upstream 43991 4213048 ~ 4216310 (+)
CI01000029_04143243_04143794 NA coding upstream 116250 4143243 ~ 4144051 (+)
CI01000029_04099307_04107542 LIN9 coding upstream 152754 4099307 ~ 4107547 (+)
CI01000029_04389599_04399047 OPN8A coding downstream 129060 4389599 ~ 4399065 (+)
CI01000029_04409794_04419021 OPN8B coding downstream 149255 4409794 ~ 4419021 (+)
CI01000029_04478628_04483582 NA coding downstream 215881 4476420 ~ 4483601 (+)
CI01000029_04521600_04521771 NA coding downstream 261061 4521600 ~ 4522751 (+)
CI01000029_04590418_04605290 NA coding downstream 329745 4590284 ~ 4605694 (+)
G153646 NA non-coding upstream 96 4259910 ~ 4260205 (+)
G153645 NA non-coding upstream 694 4259318 ~ 4259607 (+)
G153605 NA non-coding upstream 118180 4141904 ~ 4142121 (+)
G153602 NA non-coding upstream 124794 4124759 ~ 4135507 (+)
G153600 NA non-coding upstream 140080 4119885 ~ 4120221 (+)
G153649 NA non-coding downstream 4408 4264947 ~ 4265213 (+)
G153651 NA non-coding downstream 7208 4267747 ~ 4268078 (+)
G153654 NA non-coding downstream 9678 4270217 ~ 4270439 (+)
G153658 NA non-coding downstream 24687 4285226 ~ 4285456 (+)
G153659 NA non-coding downstream 25005 4285544 ~ 4285771 (+)
G153475 NA other upstream 698297 3545125 ~ 3562004 (+)
G152451 NA other upstream 1497362 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2732402 1526754 ~ 1527899 (+)
G151495 NA other upstream 3888379 366541 ~ 371922 (+)
G151415 NA other upstream 4035056 170521 ~ 225245 (+)
G153790 NA other downstream 473050 4733589 ~ 4740107 (+)
G154587 NA other downstream 1010481 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1196702 5461497 ~ 5470346 (+)
G155079 NA other downstream 2022146 6282685 ~ 6288398 (+)
G155083 NA other downstream 2170996 6431535 ~ 6490294 (+)

Expression


Co-expression Network