XLOC_000878


Basic Information

Item Value
gene id XLOC_000878
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58956066 ~ 58959457 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003274
aaaattctctcattattctgccatttagcaaatgtaagttatttaggtaatcctaacagacctaaaatagtaaacattgagtatgatttaccatcagacattttaaaaaaatggttatattCCTTTATTTAGAGTGCATGTAAACCTGTGGTTTTAACTGTATATGACAGTGTTATCTTCAATACTGTGAGAATGCAATGATCAAAGAACACCCAATTTAGTCCAGGATGAGACCGAGACTCTTCATTGATGATCAGCTGATCCTCTCTTcatataataataactttaagCGCTCCTCTGAGCACTGAGCGACCAAACCCAGCCCATCAGCGCAgctgctttataaatgcagcgtTAATGCCGTTTCCTTCCCATCTGCATTGTGTCCTGTGGACATCAGGGACTGACCTGCAGCGGTTACCATGGAAACGGATGTTATGCTCTCTTCCTGACCTGCAGATTTAAGGTCAAACCCGAACCCAAAACAACAGCTCTCCGGCTATAATGAGTCAATATTCCACATTATTCTCCCAGAGCAAACATTCCTCCATCATTACACATTTACCAGAGGGGAAAATGAGCCGGAGTATGACCTGCTGTCTCAAAATAGACCTAAAGTATATGATAAAACATCTACTGATGTGGTCTGAACaatattatttagattttcttttcttgtttcaaGCCTAAACTCACTTTATTTCATGCATTTTCAGAGAATAAGGTGGAGTGTGTGCTGTTTCACTTCTCCAGGTAATGTCAGTGTTGAATGTGAGATGTAAACTAGATGATGATCATCTTTTCCCCAGTAATGCCCTGggtcacaccacactgattgagATCAATGTAATCTAAGAAAAGTACCACTGTTTCACCACTACTCAATATTAAACAGCCAGACCTATGTGCTTAATGCATTCAAAGTGTCCAGAAAAACGAATAGTTTTCCGACCAGCAAATGCAGAACACTTAGTTTAGATCCGTCCTTCCTGATCCTGAAGATGATCTCCTGACAGTGAACTGTACTGTGAACTGACAGGTATGCTGGACTGAGCATACCAAAGGTCTCCGCGCTGCCCTTCCCAACACAAACAGCGGATAATCATTAACCACAACACGGACAACCGCACAAACTCACCTGCAGATGAGAGATGTTCCTGTGCTGAAGTTTGTCAAGAAGAGCTCATGATCAGAGTGTTCTCCGAGAGCCTCACAGCTGACGAGTTCACACACGCTCCTCCCGCGTGCGCATGCGTCGCTGTCTCCCGCGCATTCCTGGCATTCCGCGCGCACTCACCTGTGTGTGTGACGCCGCCCGGGGCATCGAAAACTCGCTCCGGTGAAAATCAGCCCGATCTGAGGACTACGCCCCTCGGAGATGACGCGTATTGCGCAACGCCCGCGTTCACGCTGCTGCGCGCTCATGGAGAAGAATGTGCTTAAATGGAGACCGGGGCATGCTGTCACAGGTTTACCTCAACTGCAGACTCAGGGGGGCGTGGTCTTCAGGGCGGAGCTGGATGCAGGAGGCGGAGACTCTTTTATCACGGCGACGCAGCCTCGGGATGATGCTGTGACGGAAGAGGTCAGTGCGCTTGAGGTCCAGCGAGTGTCTGCTGCTCATCGTGCCGGTGGTACAGTTATTCTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003274 True 1650 lncRNA 0.46 2 58956066 58959457

Neighbor

gene id symbol gene type direction distance location
XLOC_000877 trip10b coding upstream 20168 58922027 ~ 58935898 (+)
XLOC_000876 NA coding upstream 101689 58853170 ~ 58854377 (+)
XLOC_000875 tmed1b coding upstream 105380 58840889 ~ 58850686 (+)
XLOC_000874 NA coding upstream 173774 58778053 ~ 58782292 (+)
XLOC_000873 CABZ01084617.1 coding upstream 212029 58735326 ~ 58744037 (+)
XLOC_000879 NA coding downstream 15560 58975017 ~ 58976687 (+)
XLOC_000880 eri2 coding downstream 17805 58977262 ~ 58979451 (+)
XLOC_000881 thumpd1 coding downstream 22528 58981985 ~ 58985885 (+)
XLOC_000882 CABZ01083166.1 coding downstream 30664 58990121 ~ 59000239 (+)
XLOC_000883 cdc37 coding downstream 48079 59007536 ~ 59014053 (+)
XLOC_000871 NA non-coding upstream 286991 58646685 ~ 58669075 (+)
XLOC_000865 NA non-coding upstream 360299 58586353 ~ 58595767 (+)
XLOC_000864 NA non-coding upstream 370934 58577919 ~ 58585132 (+)
XLOC_000888 FP015850.1 non-coding downstream 171835 59131292 ~ 59131406 (+)
XLOC_000889 NA non-coding downstream 178426 59137883 ~ 59138594 (+)
XLOC_000893 NA non-coding downstream 202508 59161965 ~ 59162831 (+)
XLOC_000894 NA non-coding downstream 288673 59248130 ~ 59251679 (+)

Expression


Co-expression Network