G156459


Basic Information

Item Value
gene id G156459
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7021086 ~ 7021734 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU177641
CTTTCACTAGTAGCCGTCTGCAAAGCCCCATAATGCAAATTTCAGCTTCCCTTGAGACGTCAACACACATGTAACGGGATTGGCTTGATTTATGAAGCTTGTCCAGCTCGATAGTTGAGCTAGCAGTTAGTGAGCCATCAATAAGAGTCAGGACAGTCTAGGGATGTGTGTAGTGTAGCTGCGTTGCTTGCGGCTCAATACCTTCGATACATTTTGAAGGTTTTGTTAACAAAGTTGCACCCCGATGTGCTGTAAAACGTGCCTGTGATTTTGGGATTACTGGAGATTAAATTTTAAACACTGATATACAGCTTCAGCAATGCCAAAGTGTGAGAAACACGAAACCCCTTTCCGATGCCCTATTTTCCTCATCTCAACGTCAACAACTTCGGCCCCAGACGCTCTCGGTTTTCATCCACCGCAGGCTGGTGACTCTGTGAGTGCTTTAAAATGACAGACTGTGATGTTTGCTTCGGTTTGAAGTATTCCCATCTTTCCCAACACTTCAGGTTAGCGAAGGAAGCCACGTGTAAGTCTTAATCCTTTCTCAGGGAATCCCACGACACCTTCTGTTTCAAACACATCGGCAGCAAACAACAAAGAGCAGCGTCTGTGTGAATGAGATCTGCTGCTAAACCTGCTCTGAAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU177641 True 649 lncRNA 0.45 1 7021086 7021734

Neighbor

gene id symbol gene type direction distance location
CI01000029_06921800_06922750 TMEM121A, TMEM121B, TMEM121 coding downstream 97971 6921281 ~ 6923115 (-)
CI01000029_06832914_06833074 NDUFB1 coding downstream 188012 6831854 ~ 6833074 (-)
CI01000029_06798103_06806327 EXTL3 coding downstream 214240 6798040 ~ 6806846 (-)
CI01000029_06739098_06769987 NA coding downstream 251099 6738533 ~ 6769987 (-)
CI01000029_06719634_06722376 NA coding downstream 297914 6719527 ~ 6723172 (-)
CI01000029_07332828_07336542 ATP6V1D coding upstream 310561 7332295 ~ 7336542 (-)
CI01000029_07346183_07362585 RBM25.S, RBM25, RBM25B coding upstream 324331 7346065 ~ 7362585 (-)
CI01000029_07388885_07402311 SLC35B2 coding upstream 366510 7388244 ~ 7402678 (-)
CI01000029_07405933_07416452 NA coding upstream 383809 7405543 ~ 7416952 (-)
CI01000029_07419676_07421496 NA coding upstream 397901 7419635 ~ 7422668 (-)
G156416 NA non-coding downstream 118870 6893214 ~ 6902216 (-)
G156410 NA non-coding downstream 134387 6882587 ~ 6886699 (-)
G156401 NA non-coding downstream 159329 6861431 ~ 6861757 (-)
G156400 NA non-coding downstream 159842 6860954 ~ 6861244 (-)
G156396 NA non-coding downstream 168762 6852124 ~ 6852324 (-)
G156463 NA non-coding upstream 6824 7028558 ~ 7028779 (-)
G156469 NA non-coding upstream 15447 7037181 ~ 7037486 (-)
G156473 NA non-coding upstream 32695 7054429 ~ 7054771 (-)
G156477 NA non-coding upstream 44034 7065768 ~ 7066104 (-)
G156492 NA non-coding upstream 90519 7112253 ~ 7112673 (-)
G154415 NA other downstream 2033661 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 2543874 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 3313834 3698572 ~ 3707883 (-)
G153891 NA other downstream 3734532 3248777 ~ 3286554 (-)
CI01000029_02589994_02592379 NA other downstream 4428284 2587549 ~ 2592379 (-)
G156542 NA other upstream 148633 7170367 ~ 7170951 (-)
G156495 NA other upstream 344593 7365007 ~ 7371921 (-)

Expression


Co-expression Network