Item | Value |
---|---|
gene id | G156495 |
gene name | NA |
gene type | misc |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000029 |
NCBI id | null |
chromosome length | 9486966 |
location | 7365007 ~ 7371921 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU177691 | False | 1875 | lncRNA | 0.49 | 9 | 7365007 | 7369547 |
TU177684 | False | 3136 | TUCP | 0.43 | 2 | 7366327 | 7369547 |
TU177685 | False | 2090 | TUCP | 0.46 | 5 | 7366327 | 7369547 |
TU177687 | False | 2064 | lncRNA | 0.46 | 4 | 7366327 | 7369547 |
TU177688 | True | 2663 | lncRNA | 0.45 | 8 | 7366327 | 7371921 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000029_07346183_07362585 | RBM25.S, RBM25, RBM25B | coding | downstream | 2422 | 7346065 ~ 7362585 (-) |
CI01000029_07332828_07336542 | ATP6V1D | coding | downstream | 28465 | 7332295 ~ 7336542 (-) |
CI01000029_06921800_06922750 | TMEM121A, TMEM121B, TMEM121 | coding | downstream | 441892 | 6921281 ~ 6923115 (-) |
CI01000029_06832914_06833074 | NDUFB1 | coding | downstream | 531933 | 6831854 ~ 6833074 (-) |
CI01000029_06798103_06806327 | EXTL3 | coding | downstream | 558161 | 6798040 ~ 6806846 (-) |
CI01000029_07388885_07402311 | SLC35B2 | coding | upstream | 16323 | 7388244 ~ 7402678 (-) |
CI01000029_07405933_07416452 | NA | coding | upstream | 33622 | 7405543 ~ 7416952 (-) |
CI01000029_07419676_07421496 | NA | coding | upstream | 47714 | 7419635 ~ 7422668 (-) |
CI01000029_07435007_07443830 | TCTE1 | coding | upstream | 63019 | 7434940 ~ 7443830 (-) |
CI01000029_07455468_07464461 | RNF8 | coding | upstream | 83439 | 7455360 ~ 7464465 (-) |
G156594 | NA | non-coding | downstream | 34401 | 7330245 ~ 7330606 (-) |
G156588 | NA | non-coding | downstream | 47462 | 7316066 ~ 7317545 (-) |
G156587 | NA | non-coding | downstream | 54987 | 7309798 ~ 7310020 (-) |
G156584 | NA | non-coding | downstream | 73033 | 7287533 ~ 7291974 (-) |
G156574 | NA | non-coding | downstream | 101726 | 7260720 ~ 7263281 (-) |
G156607 | NA | non-coding | upstream | 75632 | 7447553 ~ 7447796 (-) |
CI01000029_07468989_07470230 | NA | non-coding | upstream | 93950 | 7465871 ~ 7471489 (-) |
G156615 | NA | non-coding | upstream | 115094 | 7487015 ~ 7487242 (-) |
G156507 | NA | non-coding | upstream | 128414 | 7500335 ~ 7502988 (-) |
G156504 | NA | non-coding | upstream | 131987 | 7503908 ~ 7514798 (-) |
G156542 | NA | other | downstream | 194056 | 7170367 ~ 7170951 (-) |
G154415 | NA | other | downstream | 2377582 | 4986108 ~ 4990990 (-) |
CI01000029_04460778_04463540 | FKBP1B | other | downstream | 2887795 | 4460159 ~ 4463540 (-) |
CI01000029_03698769_03707177 | NA | other | downstream | 3657755 | 3698572 ~ 3707883 (-) |
G153891 | NA | other | downstream | 4078453 | 3248777 ~ 3286554 (-) |