G155632


Basic Information

Item Value
gene id G155632
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7951604 ~ 7961160 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU176712
AAAGTCATGATTGACAGCTGTGGAGTATGGGCGGAGCTCCACTTCAGGATCACTACTGCACAGACTAACACTTCAAAAGATCAGCGCACAATGTCAACGGCCATTTCCGGGATATTTTGGCTTAATTTTTCTATGCTCTAGAGCCTTCCAGAAAGTTAAACACACGTTGTACTCACTCTTTGCCAGGTATGTCTTGTGAATCAACCCCGGCAGCACGTGACCGTCCTCAATGCTGAAGTTGTCATGTGGTCCAAAAACATTGGTGGGTATAACGGCGGTGTATCTCCGACCATACTTCTCAAAACATGACCTGTTGTGGACATCAATCATGCGTTTGGCGTAGGCATAACCGAAATTAGACTCATGTGGCGGACCGTTGTGGATCATGGTCTCATCTATGGGGTAGGTGGTTTTATCCGGGAATATACACGTGGACAGGCAAGAAACGACCTTCACCACCCCGAACTCATGAGCCGTCTGCAGCACGTTGTCATTGATAAATATATTATTCCTCCAGAAGTCCAGGTTCTGTCTCATGTTTTTGTAGAGCCCACCCACCAAGGCGGCCAAATGAATGACGTGTGTCGGACGATATTTCTGGAAAACTGCTCTCGTCTCTTCAGCGCTCATGAGATTGGCATCTTTAGATGACAGGAATATCCATTCTTCTCCTTCTCTCCTTCCACCCTCCTCTTTCACCACCCGCTCTATCGCTCGCCCCACCAGCCCACTGCCGCCCGTCACCAACACACGCATCGCCCCGACAGGATGGTCCATCTGCTTACTCATTCCCGCTCTGTGAGTTCTGAGGAAAAGGGAAAAAACTTTTCCACCTACTGGTTTATGTACTTACACACACCTACATTCAAGGACTGTCTTCTGAAATACGTCTGAGGGTTGCACTGGGCGGAGTTTATATGAGTACTTGTGAGAAAAAACTGGGATGGCTTGAGAGTGAGTGAATAATGGGGTAATTTTCATTTTAAAGTGAACTAATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU176712 True 998 lncRNA 0.47 6 7951604 7961160

Neighbor

gene id symbol gene type direction distance location
CI01000029_07933165_07944093 NA coding upstream 7511 7933165 ~ 7944093 (+)
CI01000029_07922221_07926151 NA coding upstream 24068 7922221 ~ 7927536 (+)
CI01000029_07885342_07908699 ARHGAP39 coding upstream 41812 7884282 ~ 7909792 (+)
CI01000029_07672445_07687240 DUSP10 coding upstream 263731 7672445 ~ 7687873 (+)
CI01000029_07653640_07663101 NA coding upstream 288503 7653334 ~ 7663101 (+)
CI01000029_07997857_08002279 PYCRL coding downstream 36536 7997696 ~ 8003097 (+)
CI01000029_08007965_08016092 EEF1DB, EEF1D coding downstream 45895 8007055 ~ 8016149 (+)
CI01000029_08019292_08036434 NA coding downstream 58132 8019292 ~ 8036758 (+)
CI01000029_08053844_08058278 NA coding downstream 92684 8053844 ~ 8058521 (+)
CI01000029_08072926_08079001 PHACTR1 coding downstream 111766 8072926 ~ 8079112 (+)
G155649 NA non-coding upstream 7818 7942756 ~ 7943786 (+)
G155648 NA non-coding upstream 9123 7942267 ~ 7942481 (+)
G155647 NA non-coding upstream 9755 7941644 ~ 7941849 (+)
G155646 NA non-coding upstream 10239 7940887 ~ 7941365 (+)
G155645 NA non-coding upstream 10805 7939547 ~ 7940799 (+)
G155682 NA non-coding downstream 2522 7963682 ~ 7963894 (+)
G155683 NA non-coding downstream 5127 7966287 ~ 7966526 (+)
G155662 NA non-coding downstream 8344 7969504 ~ 8047016 (+)
G155667 NA non-coding downstream 98899 8060059 ~ 8063853 (+)
G155674 NA non-coding downstream 104540 8065700 ~ 8066608 (+)
G155627 NA other upstream 19427 7931480 ~ 7932177 (+)
G155522 NA other upstream 313770 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1044172 6905834 ~ 6908633 (+)
G155083 NA other upstream 1461310 6431535 ~ 6490294 (+)
G155079 NA other upstream 1663206 6282685 ~ 6288398 (+)
G156007 NA other downstream 1003658 8964818 ~ 9064541 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location