G155667


Basic Information

Item Value
gene id G155667
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8060059 ~ 8063853 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU176748
GCCGTAGACAGGTGAAGTGCTCTGGATCATTGATCGGCACTGATGATGTCACAGCTACTCGGAGATCGGTGCCGTTTTTACGTTATTTACTACATCTACATGCATGTGTCATGAGCCCTAGCCTGTGTAACGCGTGAATGAGGGACTCGCGCGCGGAACATCCGCCTCTCCGCCGCATCAGTGCAGATTCTCCGTGCCGAACACGTCATCCCGGTTAGTAACGGTAGTACGGCAGCAGGATTCCACGCGCTCTGGATGTTTCCGTTCATCCGTGTGCTGCATCAGGGCGGGATGCGATTGACAGTCCGTGCGCTTCTGTTTCGCGTGTGTCGTGTCGGTTGATCGGTTAACGGAGCGAGGAGGAGTCTCCATCCCTCCCCCCTGCTCGCGCTCTTCCGTGTCTCTACCGTGACTGTCCCTCGCCGTTAACGGGGGCTGCACCGGGGGTCCCGCGTCTCTGATGGCGGCGGCGGCGCCCGAGCAGGAGGATGTGGACCGGCGGCCCATCAGAAGAGCCCGATCCAAGAGCGACACCCCGTACCTGACCGAAACCAGACTGTCCTACACATTACAGACAGGTGAGTGTGCGAGTTCACTACTGTACTGTGGTAATACCATGCTATTGTAATATATATATACCACGGAACAGAATGATTACCATGTTCATATTGGAATGTAGCAGCATGGCACTCCAAGTAAAGAATGTCATGATATCGTGACTAAAAACACATGCTTTTACCAAAAATAGTGATGAACATAGACATGACCAAATATCATAGTAAATGCACTTTGATATGGTACAAAATGATTACCATATACATATGCCACTATATTTACTACATATTACTCCAAGCTATTTTAAAAAATACCATAATACATAAGTCAAAAAATAAAAATAAAAAAATAAAACGGAGCATTATAACATGTTAATTAGAGTATCTACTCCAAACTACTTCAAAAAATCCCAATATTACCATGGTACATGTGCAAAAACATGGTATTACCATTACCAAATACACATGTGCCATAATATTTACATATTACTCCAAGCTTTTAAAAAAATACCATGGTGCATTGACATATAGCAGGTTATTTAGAGTATTTACTCCAAAGTACTTTAAATAAATCTAATTTTACTGGTTACATTTGCAAAAAACATGGTATCACCATTACCAAATACACATATGTGCTATTATTTTGACATATCAGTCCAAGCTACTTCAAAATACCATGGTGCGTTGACAAATACCATGTTATTTAGAGTATTTACTCAAATAATCCCAATATTACCATGGTACATGTCCAAAAACACATGCTTTTACCATAGTAGTCCAAAACACATAGCCTACAAATGCCATTATATTTACAAAGTACTCCAAACTACTTCAAAAAATACAACATATGTCATGTGCATTAATATATACCATGTTATTTAGAGTAATTAATCCAAAGTACTTCCAAAATTACCATGGTACATGTGCAAAAAAACACAGAATTACCATGGCACTGAATGATTACCATATCCATATGGTATTATTTACATGGTACTCCAAAGTATTGCAAAAATTACCATGGTACAGTGCCCAAAAAATAATACTATGGTACTGAGTGATTACACAGACCAAATATCATAGAGAATACAATAGTTTATGAACTTTGATAAGGTACCAAACACACATGTGCTATTATATTTACATAATATTCCAAGCTACTTCAAAAATACCATGGTGCATTGACATATACCATGTTATTTAGAGTATGTACTCCTTGGTACTTCAAAAGATCCCAATATTAACATGGTACATGTCTAAAAACATGGATTACCATGGTACTGAATGATTACCACATCCATATGGTACTATTTATACATGGTACTCCAAAGTATTACAATGATTACTATGGTACAGTACCCAAAAATAATACTATGGTACTCAGTGATTACACAGACCAAATAACATAGAGAATACCGTAGTATATGAACTTTAATAATGTACCAAACACACATGTTGTTTTATTTTCATAATACTCCAAGCTACTTTAAAAATACCATGGTTCATTGATATATACCATGTTATTTAGAGTATCTACTCCAAGCTACTTCAAAATATCCCAATTTTACCATCGTACAATGTCCAAAATATAATACTATGGTACTGAGTGATTAGACAGACCAAATATCATAGATAATACCATAGTATATGAACTTTGATAAGGTACCAAACACACATGTGCTATTATATTTACACAATACTCCAAGCTACTTCAAAAATACCAATTTGACATATACTATGTTATTTAGAGTATCTACTCCAAGGTACTTCAAAATATCCCAATATTAGCATGGTACATGTCCTAAAACATGGTTTTACCATGGTACTGAATGACTACCAAATCCATATACTACAGTATTTACATGGTACTATAAAGAATGGTTTGATAAAAACACTGCTCCAGAGGAGTGTTAATTCAGCAGATGTTGCTTTTCCGAAGGGGAAACACACACACACACACACACTCGTGAATGCACAGAAATAAACTCAGCACTGTCTTCATGTGCCGGTGAGTCATGCAGTTCAGAGGCTGAGGATGTCATGACATGAGCGGTAAAGACTAATGACAGGACTTCAGTTCATCAGCTGGACCTGCTTTGCGTGTGTTTACGTTAGCGGCATGAGCTTCCATTTTGCATGCAATGAAAGTAGATTGAAATTTATACTGTCAAACTTGTCCGTAGCACATGCAGTTGCTTTTTAAAATGTGTTGGATCACCAACATTCAAAAAAAACAAAATCTGAGCACATAGTTATCACATGACTTTGGGTTCCTCTTTTAATGTGTCCAGCGGGTAAAAATGGTCTGTTCACTTAGTAAAGTAGTAGTGATAGTGACAGTAATAGTGACATCACTGTTACGGCCACTTTACTCTAGTGTGAGTATGACATCATACTGAAGCAGTGATAGATCATGTCACTGTGACCTACAGGCTGTTTTCCTGTCATGAAGAATCTTCCCAGCGCTGTAAATGTAAAGTGTGTCTGTGATTGAGTCACTGAGAGGTGAAGCTGTTTCATTTCATTAGTGTTTTCAGGGCAGATCAGCGCTGATGCTCCTCAGACATTCGGTTTAGTGTTTGTTCCCTTCAGTTTAACTTCTGCTCAAATCACTGCATTCAAACTTTGTTTTATAGATCATTTCAGTTGTAGATGTGCATTTTTTTGTTTGCATTTTACAATCTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTGCTCACCCTCATGTCGTTCCACACCTGTAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTGATGAAATCCGAGAGGTTTCTGACAGCAATATGATCAACACTTTCAAGGTCCAGAAAGGTACTAAAGACATCATTAAAACAGTCATGTGACTGCAGTGGTTCAACCTTAATGTTATGAAGTGACGAAAATACTTTTCGTGAGCAAAAACAAAACAAAAATAACGACTTTATTCAACAATCTCTTCTCTTCCCTGTCATTATCCTTACGCAGGTGAAGCAGTAACACAGTGAAGGCTTCAGTGTTTACGTCCAAATGCCGGCTCAGTATTGGCTAAAGCTGATCACGTGATCAGCACGACACACACGCGTGTGATGCTAACGCAGGAGCCGGCCAATAATGAGTCGTCGTTCTGACGTAGAACCTGGAAGTGCTGGACGTAAACAACGTATAAGAATGACACAGAAGAGATTTTTGAATAAAGTCGTTATTTTTGTTTTGTTTTTGCG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU176748 True 3795 lncRNA 0.38 1 8060059 8063853

Neighbor

gene id symbol gene type direction distance location
CI01000029_08053844_08058278 NA coding upstream 1538 8053844 ~ 8058521 (+)
CI01000029_08019292_08036434 NA coding upstream 23301 8019292 ~ 8036758 (+)
CI01000029_08007965_08016092 EEF1DB, EEF1D coding upstream 43910 8007055 ~ 8016149 (+)
CI01000029_07997857_08002279 PYCRL coding upstream 56962 7997696 ~ 8003097 (+)
CI01000029_07933165_07944093 NA coding upstream 115966 7933165 ~ 7944093 (+)
CI01000029_08072926_08079001 PHACTR1 coding downstream 9073 8072926 ~ 8079112 (+)
CI01000029_08140259_08140582 NA coding downstream 76322 8140175 ~ 8140945 (+)
CI01000029_08156225_08174249 SLC22A23 coding downstream 92061 8155914 ~ 8175136 (+)
CI01000029_08198433_08203489 NA coding downstream 134512 8198365 ~ 8203538 (+)
CI01000029_08288440_08301175 NA coding downstream 224587 8288440 ~ 8301357 (+)
G155662 NA non-coding upstream 13043 7969504 ~ 8047016 (+)
G155683 NA non-coding upstream 93533 7966287 ~ 7966526 (+)
G155682 NA non-coding upstream 96165 7963682 ~ 7963894 (+)
G155632 NA non-coding upstream 98899 7951604 ~ 7961160 (+)
G155649 NA non-coding upstream 116273 7942756 ~ 7943786 (+)
G155674 NA non-coding downstream 1847 8065700 ~ 8066608 (+)
G155665 NA non-coding downstream 20333 8084186 ~ 8092254 (+)
G155689 NA non-coding downstream 31970 8095823 ~ 8096101 (+)
G155691 NA non-coding downstream 34485 8098338 ~ 8098596 (+)
G155672 NA non-coding downstream 60923 8124776 ~ 8127965 (+)
G155627 NA other upstream 127882 7931480 ~ 7932177 (+)
G155522 NA other upstream 422225 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1152627 6905834 ~ 6908633 (+)
G155083 NA other upstream 1569765 6431535 ~ 6490294 (+)
G155079 NA other upstream 1771661 6282685 ~ 6288398 (+)
G156007 NA other downstream 900965 8964818 ~ 9064541 (+)

Expression


Co-expression Network