G156718


Basic Information

Item Value
gene id G156718
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8220390 ~ 8226568 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU177946
TAAATAATCCTATTTGCAAACCCAAACACGCACATCAAGCGTTTTGACGATTGACTCGCGATATAACGTGTCAAAGTCCCGAAAGCAGGCGTCGGTGTTTCCGAAATATAACAAGAAACAAACGGAATCCGCTTTGAATCTTGTAATGGAAGGACTTTAATACCTTTAGCTTTAGCCTGTTAGCCTGGACTGCATGTGTGTGTGTTTATATCAACAATAGTGGGTTCTCATTCACATCTACACGAATAAGAAGAGCGTTTATATGATCGACGACTGATGGTGTTGAAAGCACATCAAGTGAAGAAGTAACAGGAGCTGCTGGATCTTCAGGGATGTAGTGTTTGTTTAGACAGGAACGCTCGGGCAACGCTGCACGACGGAAGGAGAGGCCCCGATACCGGACTGGAAAGAGTTGCTGCGTTTCAGGGGTCCGTAATGGAGAAGACGGAGAAGAGGCCTGGATACTTTGCCAGGCTGAAGAAGAAACGGCAACAGAAGCAGAGCCAGTCGGAGAAAGCGGATGATGAGCAGAACCAATCAGATTTGGAATCGAAGACGCCAATCATCTGTGAGCCTGCTCCTATTGGACAATCTCAGGAGAGGAATGCGGAAAGAGAACAGCCTGAGAAAACCAAGAGTGGCCAAAATGACAGATCAGGTAAACATTCAGACAGGTTGAACGTCCATAAAGTTTTTAATCATGTCACCTTTATTTATATGACATATATATTCAATACAGATTGTTTCAAAGCAGCTTTACAGTGATAACAGAAGATCATCAGTTATTAAATTAGTTCATTTAGTCCAGCTCAGTTCATTAGTGTCAATGCAGTCAAATCAATAATATTGTTAAATATTAAGTGTCCCCAACTAACGTTGTCTAGGTGCAGGTCCTCCATCTGATCTGGGTATGGACCGGATCTGGCTGACTACGGTAACCTCGGGATAAACAGAGACTAATATTAGCGTAGAAGTACATCGGGTGTTATAGGAAGAGTTCCCAGTTCCGGTTGACCTAATTTATGCAGCCTAACAATCCTTTAACGGATGTGAATTATAGAAATATGATAATGTGTTATGTGTATGAGAGATGCGTTTTTAGTCTTAAACTGACAGAGTGTGTCTGCTTCCCGAACAATGCTAGGAAGATTTTTCCAGAGTTTAGGTGCCAAATAGGAGAAGGATCTACTGCTAGCAGTCAATTTTGATATTCTAGGTATTATCAACTGGCCAGAATTTTGAGATCGCAATAGACTTTGAGGGACTATGATGCGTTAAGAGCTCGCTCAAGTACTGGGGAGCTAAACCATTTAGTGTTTTGTAAGTAATTAACAAGATTTCAAAATGTATGCAATGTTTAACAGGAAGCCAATGCAGTGATGACAGAACTGGGCTAATATGCTCATACTTCCTGGTTCGAGTAAGAACTCTAGCTGCTGCGTTTTGGACCAGCTGGAGTTTGTTTATTAAGCGAGCAGGGCAACCACCCAGTAATCTAGCCTTGAGGTCATAAACGCATGATCTGACTTTTCTGCATTTGTCATTGAGAGCATATGTCGTAATTTAGATATATTTTATGATGGAAAAATGCGGTTTTACAGATGCTAGAAACATGGCTTTCAAATGAAAGATTGGTATCAAAGAGCACACCCAGGTTCCTAAGTGACGACGAAGACTTAACAGAGCAGCCATCAAGTGTTAGACAGTATTCTCGGTTATTACGTGTAGAGGTTTTTGATCCAATAATTAAAACCTCTGTTTTTTCAGAATAAAGTAGTAGGAAATTACTAGTCACCCAATTATATCAGCTATGCATTTAGTTAATTTTGTGAGTTTGTGGCATGAAGAAATATAGAGCTGAGTATCATCAGCGTAACAGTGAAAACTAACGCCATGCTTCCTAATGATATCTCCCAAGGGTAGCATGTACAGAGTGAACAGCAACGGTCCTAGTACTGAGCCTTGCGGTACTCCATACTGAACTTGTGATTGATATGACAACTCTTCGTTTACTACTACAAACTGATAATGGTTAGATAAGTAATCAGGGCAATCCAAATTTAGTTTATGAATATTTTTGGGAAAAATGGGTCTTAATTTTCTTATTTAGTTTCTGTTTTAAATTGTATTAGAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU177946 True 2135 lncRNA 0.40 3 8220390 8226568

Neighbor

gene id symbol gene type direction distance location
CI01000029_08205518_08214627 NA coding downstream 5763 8205470 ~ 8214627 (-)
CI01000029_08185095_08190376 NA coding downstream 30014 8185029 ~ 8190376 (-)
CI01000029_08178470_08183999 PSMG4 coding downstream 36391 8178420 ~ 8183999 (-)
CI01000029_08100383_08125091 NA coding downstream 95299 8099888 ~ 8125091 (-)
CI01000029_08092122_08094899 NA coding downstream 125491 8091667 ~ 8094899 (-)
CI01000029_08229070_08234969 CTSBB coding upstream 2397 8228965 ~ 8234969 (-)
CI01000029_08237701_08245368 FDFT1 coding upstream 10349 8236195 ~ 8245368 (-)
CI01000029_08250264_08262665 GATA4 coding upstream 23681 8250249 ~ 8262665 (-)
CI01000029_08384203_08407906 NA coding upstream 157057 8382870 ~ 8407906 (-)
CI01000029_08463083_08479077 NA coding upstream 236424 8462992 ~ 8479190 (-)
CI01000029_08041274_08048935 NA non-coding downstream 173293 8040747 ~ 8049427 (-)
G156736 NA non-coding downstream 290047 7929759 ~ 7930343 (-)
G156661 NA non-coding downstream 491185 7728966 ~ 7729205 (-)
G156659 NA non-coding downstream 501353 7718713 ~ 7719037 (-)
G156628 NA non-coding downstream 521514 7641036 ~ 7698876 (-)
G156850 NA non-coding upstream 40832 8267400 ~ 8267662 (-)
G156851 NA non-coding upstream 44184 8270752 ~ 8271021 (-)
G156852 NA non-coding upstream 44881 8271449 ~ 8271686 (-)
G156854 NA non-coding upstream 46703 8273271 ~ 8273498 (-)
G156495 NA other downstream 850843 7365007 ~ 7371921 (-)
G156542 NA other downstream 1049439 7170367 ~ 7170951 (-)
G154415 NA other downstream 3232965 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 3743178 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 4513138 3698572 ~ 3707883 (-)

Expression


Co-expression Network