Gene
RNA
| Item | Value |
|---|---|
| gene id | G155716 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 8236201 ~ 8237301 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU176799 | True | 1101 | lncRNA | 0.35 | 1 | 8236201 | 8237301 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000029_08198433_08203489 | NA | coding | upstream | 32663 | 8198365 ~ 8203538 (+) |
| CI01000029_08156225_08174249 | SLC22A23 | coding | upstream | 61065 | 8155914 ~ 8175136 (+) |
| CI01000029_08140259_08140582 | NA | coding | upstream | 95256 | 8140175 ~ 8140945 (+) |
| CI01000029_08072926_08079001 | PHACTR1 | coding | upstream | 157089 | 8072926 ~ 8079112 (+) |
| CI01000029_08053844_08058278 | NA | coding | upstream | 177680 | 8053844 ~ 8058521 (+) |
| CI01000029_08288440_08301175 | NA | coding | downstream | 51139 | 8288440 ~ 8301357 (+) |
| CI01000029_08318488_08338631 | NA | coding | downstream | 81187 | 8318488 ~ 8339359 (+) |
| CI01000029_08346604_08357224 | NA | coding | downstream | 109100 | 8346401 ~ 8357633 (+) |
| CI01000029_08367350_08368348 | GPR6 | coding | downstream | 129043 | 8366344 ~ 8368514 (+) |
| CI01000029_08425310_08441838 | NA | coding | downstream | 186496 | 8423797 ~ 8441847 (+) |
| G155718 | NA | non-coding | upstream | 4874 | 8228916 ~ 8231327 (+) |
| G155731 | NA | non-coding | upstream | 8750 | 8227136 ~ 8227451 (+) |
| G155713 | NA | non-coding | upstream | 9643 | 8214359 ~ 8226558 (+) |
| G155698 | NA | non-coding | upstream | 81283 | 8154717 ~ 8154918 (+) |
| G155672 | NA | non-coding | upstream | 108236 | 8124776 ~ 8127965 (+) |
| G155722 | NA | non-coding | downstream | 3075 | 8240376 ~ 8240659 (+) |
| G155724 | NA | non-coding | downstream | 3874 | 8241175 ~ 8241628 (+) |
| G155723 | NA | non-coding | downstream | 5010 | 8242311 ~ 8242805 (+) |
| G155725 | NA | non-coding | downstream | 7698 | 8244999 ~ 8245490 (+) |
| G155720 | NA | non-coding | downstream | 11188 | 8248489 ~ 8248713 (+) |
| G155627 | NA | other | upstream | 304024 | 7931480 ~ 7932177 (+) |
| G155522 | NA | other | upstream | 598367 | 7634833 ~ 7637834 (+) |
| CI01000029_06906861_06907157 | NA | other | upstream | 1328769 | 6905834 ~ 6908633 (+) |
| G155083 | NA | other | upstream | 1745907 | 6431535 ~ 6490294 (+) |
| G155079 | NA | other | upstream | 1947803 | 6282685 ~ 6288398 (+) |
| G156007 | NA | other | downstream | 727517 | 8964818 ~ 9064541 (+) |
