G155724


Basic Information

Item Value
gene id G155724
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8241175 ~ 8241628 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU176812
CCAGAAGGCCCGTCCCTGCTGCTGGTCCTCCAGATAGTCCCTGATGATGTTGGTCTTCTGGAGGAACAGACCCATGGAGTTGGCCAGCTCCGTGTCCCGGCCCACCTCAACATCCTCCAGCTGGGACGCAGAGAAGAGTCGGGACAGTCCGATCCCCACCAGACCCGCCACATAATGACAGTACTGCAGGGAAAACAGGGCCATTAAAATGCTGATTTATGCTAAAAGCATTTATACACAGCTGGACAGATGTTTACAACATCATATATGACAAATATCTCATGCAGAAACGCTTTAAGATGACAGTGAAAGCACTTCTGCTGAGTTATACGATTATAAATCTACATAAACATCAAATCAACACGTCAAACACGCATGTGAGACGGTGTGACGTTTACTTTGTCCCACTCCTTCATTGAAGCAACTTTCTTCTCCAGGAATTCAGCCATTCCTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU176812 True 454 lncRNA 0.47 1 8241175 8241628

Neighbor

gene id symbol gene type direction distance location
CI01000029_08198433_08203489 NA coding upstream 37637 8198365 ~ 8203538 (+)
CI01000029_08156225_08174249 SLC22A23 coding upstream 66039 8155914 ~ 8175136 (+)
CI01000029_08140259_08140582 NA coding upstream 100230 8140175 ~ 8140945 (+)
CI01000029_08072926_08079001 PHACTR1 coding upstream 162063 8072926 ~ 8079112 (+)
CI01000029_08053844_08058278 NA coding upstream 182654 8053844 ~ 8058521 (+)
CI01000029_08288440_08301175 NA coding downstream 46812 8288440 ~ 8301357 (+)
CI01000029_08318488_08338631 NA coding downstream 76860 8318488 ~ 8339359 (+)
CI01000029_08346604_08357224 NA coding downstream 104773 8346401 ~ 8357633 (+)
CI01000029_08367350_08368348 GPR6 coding downstream 124716 8366344 ~ 8368514 (+)
CI01000029_08425310_08441838 NA coding downstream 182169 8423797 ~ 8441847 (+)
G155722 NA non-coding upstream 516 8240376 ~ 8240659 (+)
G155716 NA non-coding upstream 3874 8236201 ~ 8237301 (+)
G155718 NA non-coding upstream 9848 8228916 ~ 8231327 (+)
G155731 NA non-coding upstream 13724 8227136 ~ 8227451 (+)
G155713 NA non-coding upstream 14617 8214359 ~ 8226558 (+)
G155723 NA non-coding downstream 683 8242311 ~ 8242805 (+)
G155725 NA non-coding downstream 3371 8244999 ~ 8245490 (+)
G155720 NA non-coding downstream 6861 8248489 ~ 8248713 (+)
G155753 NA non-coding downstream 132406 8374034 ~ 8374329 (+)
G155757 NA non-coding downstream 136443 8378071 ~ 8378290 (+)
G155627 NA other upstream 308998 7931480 ~ 7932177 (+)
G155522 NA other upstream 603341 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1333743 6905834 ~ 6908633 (+)
G155083 NA other upstream 1750881 6431535 ~ 6490294 (+)
G155079 NA other upstream 1952777 6282685 ~ 6288398 (+)
G156007 NA other downstream 723190 8964818 ~ 9064541 (+)

Expression


Co-expression Network