Gene
RNA
| Item | Value |
|---|---|
| gene id | G155725 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 8244999 ~ 8245490 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU176813 | True | 492 | lncRNA | 0.60 | 1 | 8244999 | 8245490 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000029_08198433_08203489 | NA | coding | upstream | 41461 | 8198365 ~ 8203538 (+) |
| CI01000029_08156225_08174249 | SLC22A23 | coding | upstream | 69863 | 8155914 ~ 8175136 (+) |
| CI01000029_08140259_08140582 | NA | coding | upstream | 104054 | 8140175 ~ 8140945 (+) |
| CI01000029_08072926_08079001 | PHACTR1 | coding | upstream | 165887 | 8072926 ~ 8079112 (+) |
| CI01000029_08053844_08058278 | NA | coding | upstream | 186478 | 8053844 ~ 8058521 (+) |
| CI01000029_08288440_08301175 | NA | coding | downstream | 42950 | 8288440 ~ 8301357 (+) |
| CI01000029_08318488_08338631 | NA | coding | downstream | 72998 | 8318488 ~ 8339359 (+) |
| CI01000029_08346604_08357224 | NA | coding | downstream | 100911 | 8346401 ~ 8357633 (+) |
| CI01000029_08367350_08368348 | GPR6 | coding | downstream | 120854 | 8366344 ~ 8368514 (+) |
| CI01000029_08425310_08441838 | NA | coding | downstream | 178307 | 8423797 ~ 8441847 (+) |
| G155723 | NA | non-coding | upstream | 2194 | 8242311 ~ 8242805 (+) |
| G155724 | NA | non-coding | upstream | 3371 | 8241175 ~ 8241628 (+) |
| G155722 | NA | non-coding | upstream | 4340 | 8240376 ~ 8240659 (+) |
| G155716 | NA | non-coding | upstream | 7698 | 8236201 ~ 8237301 (+) |
| G155718 | NA | non-coding | upstream | 13672 | 8228916 ~ 8231327 (+) |
| G155720 | NA | non-coding | downstream | 2999 | 8248489 ~ 8248713 (+) |
| G155753 | NA | non-coding | downstream | 128544 | 8374034 ~ 8374329 (+) |
| G155757 | NA | non-coding | downstream | 132581 | 8378071 ~ 8378290 (+) |
| G155758 | NA | non-coding | downstream | 136095 | 8381585 ~ 8381784 (+) |
| G155769 | NA | non-coding | downstream | 137378 | 8382868 ~ 8384341 (+) |
| G155627 | NA | other | upstream | 312822 | 7931480 ~ 7932177 (+) |
| G155522 | NA | other | upstream | 607165 | 7634833 ~ 7637834 (+) |
| CI01000029_06906861_06907157 | NA | other | upstream | 1337567 | 6905834 ~ 6908633 (+) |
| G155083 | NA | other | upstream | 1754705 | 6431535 ~ 6490294 (+) |
| G155079 | NA | other | upstream | 1956601 | 6282685 ~ 6288398 (+) |
| G156007 | NA | other | downstream | 719328 | 8964818 ~ 9064541 (+) |
