Gene
RNA
| Item | Value |
|---|---|
| gene id | G156028 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 9155752 ~ 9157445 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU177151 | True | 671 | lncRNA | 0.41 | 5 | 9155752 | 9157445 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000029_09146276_09147817 | NA | coding | upstream | 7921 | 9146224 ~ 9147831 (+) |
| CI01000029_09142383_09143514 | NA | coding | upstream | 12224 | 9142331 ~ 9143528 (+) |
| CI01000029_09132920_09139682 | ACTR10 | coding | upstream | 15433 | 9132570 ~ 9140319 (+) |
| CI01000029_09091229_09095666 | PELI2 | coding | upstream | 58739 | 9091103 ~ 9101802 (+) |
| CI01000029_09079841_09080368 | ARF6.S, ARF6.2, ARF6, ARF6.2.L, ARF6B, ARF6A | coding | upstream | 75117 | 9078993 ~ 9080635 (+) |
| CI01000029_09159075_09162036 | NA | coding | downstream | 1630 | 9159075 ~ 9162464 (+) |
| CI01000029_09166838_09170965 | NA | coding | downstream | 9393 | 9166838 ~ 9170980 (+) |
| CI01000029_09183609_09186199 | NA | coding | downstream | 25588 | 9183033 ~ 9186473 (+) |
| CI01000029_09196479_09205243 | LRFN5B | coding | downstream | 37619 | 9195064 ~ 9205417 (+) |
| CI01000029_09272016_09280223 | NA | coding | downstream | 114536 | 9271981 ~ 9280885 (+) |
| G156091 | NA | non-coding | upstream | 30666 | 9124475 ~ 9125086 (+) |
| G156043 | NA | non-coding | upstream | 37119 | 9117716 ~ 9118633 (+) |
| G156087 | NA | non-coding | upstream | 38829 | 9116632 ~ 9116923 (+) |
| G156010 | NA | non-coding | upstream | 88549 | 9060631 ~ 9067203 (+) |
| G156099 | NA | non-coding | downstream | 24994 | 9182439 ~ 9182656 (+) |
| G156107 | NA | non-coding | downstream | 50928 | 9208373 ~ 9208598 (+) |
| G156109 | NA | non-coding | downstream | 69806 | 9227251 ~ 9227785 (+) |
| G156112 | NA | non-coding | downstream | 81810 | 9239255 ~ 9239481 (+) |
| G156113 | NA | non-coding | downstream | 82637 | 9240082 ~ 9240339 (+) |
| G156007 | NA | other | upstream | 91211 | 8964818 ~ 9064541 (+) |
| G155627 | NA | other | upstream | 1223575 | 7931480 ~ 7932177 (+) |
| G155522 | NA | other | upstream | 1517918 | 7634833 ~ 7637834 (+) |
| CI01000029_06906861_06907157 | NA | other | upstream | 2248320 | 6905834 ~ 6908633 (+) |
| G155083 | NA | other | upstream | 2665458 | 6431535 ~ 6490294 (+) |
