G156031


Basic Information

Item Value
gene id G156031
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9358580 ~ 9359289 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU177154
TTTGCAGTGAAGCTGGTTTTTAGGGAGGAAAATCTGTATAATTGCATGAAAATAACGTCCCAACGCAACCAATCTGAAGCTCCTGAAACATGTACTTGATGACAGGTTTAAGCTGATGTCTTTCTGCTGTTTTCGGGCTGTAATGTGTGAGGTTCACTGTGATGAGCTCGAGTCTTACGTTCACTGAAGACAAAGTCGCTCTTGATGTCGAAGGGCTGAATCTGGATGTCGTAGATGGAGACAGTGATTCCCTTCTGGTGGTCGCTGGAGATCATGGTGAGCGTCTGCTGAGCCGTGCACACGTACGAGCGTCCGGCGGGAGTCACCAGCGCTGACAGACGGTGTGTGCTGGCCGTGTGTTTCCCCGCTGCACACACACACACACACACACACACACACACTCATTACACCTCCATCAGAACTCTGATGATTAGTTCAGATCAGCAGAATCATCTCATACTTCACTGCAGTAATGCTGAACTAGTTAAACTAGATGACACCATTGAACAAACAAGCAAAATACTTTAAATCGTAACGTAATGTGAGTTCCTGTGAGCGAGTCGTCAGTCGCTGTGTGTGAACGTGTAAAGCGCAGTGGATGTCGCAGTGATCTCTGCAGCGCTGCATGAGGAACAATGGGCTTTGTGTCTCAGCAAACCAAAAACATGCAGAAGAAAAGCTCATTTCCAACAATAAAAGCTCAATCAATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU177154 True 710 lncRNA 0.47 1 9358580 9359289

Neighbor

gene id symbol gene type direction distance location
CI01000029_09322744_09351108 PAK5, PAK7 coding upstream 6832 9322744 ~ 9351748 (+)
CI01000029_09297723_09298362 NA coding upstream 59976 9297723 ~ 9298604 (+)
CI01000029_09284343_09295992 NA coding upstream 62588 9284343 ~ 9295992 (+)
CI01000029_09272016_09280223 NA coding upstream 77695 9271981 ~ 9280885 (+)
CI01000029_09196479_09205243 LRFN5B coding upstream 153163 9195064 ~ 9205417 (+)
CI01000029_09483322_09486962 NA coding downstream 124033 9483322 ~ 9486962 (+)
G156025 NA non-coding upstream 2349 9355383 ~ 9356231 (+)
G156019 NA non-coding upstream 101018 9251198 ~ 9257562 (+)
G156116 NA non-coding upstream 107928 9250411 ~ 9250652 (+)
G156115 NA non-coding upstream 108310 9250064 ~ 9250270 (+)
G156113 NA non-coding upstream 118241 9240082 ~ 9240339 (+)
G156128 NA non-coding downstream 42705 9401994 ~ 9446570 (+)
G156139 NA non-coding downstream 96991 9456280 ~ 9456796 (+)
G156007 NA other upstream 294039 8964818 ~ 9064541 (+)
G155627 NA other upstream 1426403 7931480 ~ 7932177 (+)
G155522 NA other upstream 1720746 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 2451148 6905834 ~ 6908633 (+)
G155083 NA other upstream 2868286 6431535 ~ 6490294 (+)

Expression


Co-expression Network