CI01000030_00937645_00942188 (LPL)


Basic Information

Item Value
gene id CI01000030_00937645_00942188
gene name LPL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 937645 ~ 942822 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_00937645_00942188.mRNA
ATGGGGAGAGTAAGCAGCGCTTGTTTTATATCATGGATGTATTTCGCCTACATTTGCTCGGGTTTTGAAACCACAATTGAGCCAACGAGTGAATCTACCGATTTTAGTAACTTAATGCAAAATGCCACAGAATGGATGATGGACCTCACCGACATTGAGTCCAAGTTTTCCTTTAGAATTAGCGAAGAACCCGAAGAAGATCTGTGCTACATAGTTCCAGGTCAACCCCAAACAATCAAAGAGTGTAACTTCAATCCAGACTCCAAGACTTTCATAGTTATTCATGGATGGTCGGTCACCGGTATGTTTGAGAGCTGGGTTCCCAAACTGGTAACAGCCCTGTATGAACGAGAGCCAACAGCCAATGTGATTGTGGTGGACTGGTTGTCCCGTGCGCAACAACATTACCCAACGTCAGCTGCCTACACCAAACTAGTGGGCAAGGATGTGGCCATGTTTGTCAACTGGTTACAGGCTGAGATTGACTATCCTTGGGAGAAACTGCATCTGTTGGGCTTCAGTCTTGGTGCTCATGTAGCAGGAATCGCTGGCCTTCTCACCAAACATAAGGTTAACAGAATCACAGGCATGGATCCCGCTGGCCCTAGCTTTGAGTACGCAGATGCCCAAAGCACTCTTTCCCCAGATGATGCCCTTTTCGTGGACGTTCTTCACACCAACACTCGCGGCTCTCCAGATCGCAGTATTGGGATTCAGAGGCCAGTGGGCCACATAGACATCTACCCCAATGGTGGAACCTTCCAACCTGGCTGTGACCTCCAGAACACTATGTTGATGGTGGCCACTACTGGTTTAAGAAACATGGATCAGATCGTGAAGTGCTCTCATGAGCGCGCCATCCACCTGTTCATCGACTCACTGGTGAACCAGGAGCAACAAAGCTTGGCTTACCGCTGCAGCTCCAAAGAGAGCTTCAACAAAGGCATGTGCCTCAGCTGCCGCAAGAATCGCTGCAACAAGGTGGGATATGGTGTGAACAAAATTCGCACACGCAGGAGCAGCAGAATGTATATGAAGACCAGAGACATGATGCCATATAAAGTTTTCCATTATCAAGTGAAGGTCCACTTCTTCAGCAAGAGCAAAATAAGCTACACCGACCAGCCCATAAAGATCTCATTGTATGGAATCCACGGCGAGAAGGAGAATATCCCTTACGTTATGCCTGCTTTAAACACAAACTCCACTGTGTCCTTCCTTTTGACCACGGATACAGACATCGGAGAGCTGCTGATGGTAAAACTTCTCTGGGAGAAAGACTCCCTCATCAGCTGGCCCTGGTGGAACCCTGATACCTTTCACATTCGCAAATTACGCATCAAATCAGGAGAGACACAATCTAAGGTCATCTTCAGTGCAAAAGAAGGTGAATTTTCCTACCTTTCCCGTGGAGGTGAGGCCGCCATCTTCGTGAAAAACAAAGAAGCCCAGTCGAGCCGCAAAAACCAGAGGTTGTACCAAAGCGGTTTCCTAGCTATGCTAATCCTCTTTGCCTCAGTTCTGAAAGCAAAACTTTCAGATTTGCCTTTGTTGCAGCCTTCAGTCAGTCTCAATGAAATGCTTTAACAAAAAATGGGACCAGATTCTCTCTCTACTGAATGAAGATGAAATGATTACTGTAAATATTTGTAATTGTCATTATATATACTTAAAAACAGCTCTTCAAATGTCTACCTTTCATTTCTTGGGTTATTGGGTCTGGCACAGGTCACTTTAAAGGCTTTGCCTCCATTTGATTCAGTTTTGTTTGGTAAAACGAGCAAAATCAACAAACAATTCTGCCACTTTTGTTTTGCTTCTCATCACCCCTTTCAAAGCACCTCAAAGGTTGTCTTCGTATGGATTTTGTTAAAAGTAATGAGGCATGAAACTACTTTCGTTCACACAGCCAAGAAGTAAAACAAGCATTTAATCTAAAAAATAACGGTCACAGTTTTCCAAGCCTGACGAGGTTGACTGCCCCACATAATATCCACAAATACATCAAAAATGTACCTTTTCCCTATTTAATGAATGTATATATTTGTATATTAAGCACATAATATATGTATTACATGTTTCTGGAGTGCTCTTTTGAGTCATGTAGACTCTATTTTTATAAACAAACATGACTGGATGAAGTTACTGGAACTGATCAGTATTTGGTCACCTGTTGTGATCATATGAATCTATAAGCCGTGCACTGTATGATGTCATTTTA

Function

symbol description
lpl Predicted to enable apolipoprotein binding activity; lipoprotein lipase activity; and phospholipase activity. Acts upstream of or within definitive hemopoiesis and response to (R)-carnitine. Predicted to be located in extracellular region and plasma membrane. Predicted to be part of chylomicron and very-low-density lipoprotein particle. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; head; immature eye; midbrain; and ovary. Human ortholog(s) of this gene implicated in Alzheimer's disease; artery disease (multiple); familial hyperlipidemia (multiple); muscular disease; and type 2 diabetes mellitus. Orthologous to human LPL (lipoprotein lipase).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01059 LPL; lipoprotein lipase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_00937645_00942188.mRNA True 2221 mRNA 0.44 10 937645 942822

Neighbor

gene id symbol gene type direction distance location
CI01000030_00873074_00886771 GPC1A coding upstream 50838 871944 ~ 886807 (+)
CI01000030_00857611_00858359 NA coding upstream 78787 857470 ~ 858858 (+)
CI01000030_00811105_00836626 GPC5B coding upstream 100897 811105 ~ 836748 (+)
CI01000030_00760361_00762546 NA coding upstream 174828 760361 ~ 762817 (+)
CI01000030_00753779_00759287 NA coding upstream 178325 753731 ~ 759320 (+)
CI01000030_00945680_00950479 NA coding downstream 2858 945680 ~ 950916 (+)
CI01000030_01003310_01003776 NA coding downstream 60292 1003114 ~ 1003795 (+)
CI01000030_01091944_01093682 KLF2A coding downstream 148877 1091699 ~ 1094481 (+)
CI01000030_01134054_01144773 STIL coding downstream 191232 1134054 ~ 1145322 (+)
CI01000030_01151171_01165675 RC3H1A coding downstream 208108 1150930 ~ 1165939 (+)
G157443 NA non-coding upstream 790 936561 ~ 936855 (+)
G157438 NA non-coding upstream 4533 932683 ~ 933112 (+)
G157338 NA non-coding upstream 12643 909005 ~ 925002 (+)
G157336 NA non-coding upstream 16090 918129 ~ 921555 (+)
G157431 NA non-coding upstream 40229 896867 ~ 897416 (+)
G157452 NA non-coding downstream 37567 980389 ~ 980764 (+)
G157337 NA non-coding downstream 38679 981501 ~ 984600 (+)
G157454 NA non-coding downstream 69610 1012432 ~ 1012687 (+)
G157456 NA non-coding downstream 71751 1014573 ~ 1014902 (+)
G157471 NA non-coding downstream 86430 1029252 ~ 1029810 (+)
G157227 NA other upstream 581162 327649 ~ 356483 (+)
G157108 NA other upstream 790792 116156 ~ 146853 (+)
G157076 NA other upstream 919889 12878 ~ 17756 (+)
G157726 NA other downstream 694045 1636867 ~ 1638227 (+)
CI01000030_02277208_02282376 TM6SF2 other downstream 1336291 2277208 ~ 2282743 (+)
G158416 NA other downstream 1653054 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 2070634 3018776 ~ 3043773 (+)

Expression


Co-expression Network