XLOC_000881 (thumpd1)


Basic Information

Item Value
gene id XLOC_000881
gene name thumpd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58981985 ~ 58985885 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001379
CGGAGcgacacacagacaaacacgcGTGCGCGGAGCGGTTTCATATTCCCGAGCCAGAGTTCCTGCATTACTGTAGTGCACTACACGGACAGCAGAAGCAGAGAGAAACGCAGTCATGTCTGAAGCCCGCAAGAGGACCAGGAGACGATTCGGCGGACACGCGCACAAGAAACAGAAGGGCGCGCGCGAGCTGGAGGTGGGCGCGCAGGGCGTGCTGATCACCTGCAATATGAACGAGCGCAAGTGCACGAGCGAAGCCTTCAGCCTCCTCAGCGAGTACGCGGACGAGCTCTACGGGCCCGAGCAGgagAGTCTCAGTGAGGATGAGGAGCAGGAGGATGAGGATGCGGAGTGTGCACTACAGAGGGAAGTGTCTCAGCTGCAGTCGTCCAGTAAGGGGCGTCAGCAGCGCTTCAGTGCGGTGGACAGCGGCGCCAACAACGTGGTGTTCATCCGCACTCATGGCGTAGACCCCGCCCAGCTGGTGCATCACATCCTGTCTGACCTCCACCTGACCCGGAAGAGGAAGTCGCGTGTGATCCTGCGCATGCTGCCAGTGAGCGCCACCTGCCGAGCGTTCCCGGAGGACATGCAGAAGCTGCTGAGTGTGTTCCTGCAGCGCTGGTTCCTTGCTCCGCGGCATGCTACCTTCCAGATCTGCTTCAAAGCCAGAAACAGCAGCCACAGCAAGAGGGAGGAAGTGATCACGGGCCGTCGCAggtctgGTTGGTCAGCTGAACCCGCTCAATAAGGTGGATCTGACCAATCCTGAGCTCTCCATCATCATCGAGATCATCAAGAGCGTCTGCTGCGTCAGCGTCGTCACCGACTACATGCTCTTCCGCAAGTACAACCTGCAGGAGGTGGCCAAAGAGCCGGCCAATCAGAACACAGGCTCACAGAAAACACCCAATCAGAACACAGACCCACAGGAAACACCCAGTCAGAACACAGACCCGCAGGAAACACCCAATCAGAACACAGACTCCAAAgaagcagccaatcagaacacagacCCACAGAAAACAGCCAATGAGAGCAAAGGTTCACAAGAATCAGCCAATCAGACGCAGGAGCACGGGAATGGAGAGCTGCAGAGTTCTGATGTTACCGTTGGCAACGGGGCAGAGGAGGCGGAGCCTGAGTGAGCTGTGATTGACAGATGTGGTGTTTGTGACAGGAGTTGCCCTCAGGCTGAGCGGCGGTCAGCGGCTCCTCGTTCACTGCTGAGTCAGGGGAGCTCAGTACAGCTCAGTAGCGTCCTGTTTCCTGCTGTTTACTTCCTGTTACTGTGGTTTTGGTCTGCCAgtcagacgtgtgtgtgtgtggagataaaataaaaacacaactgGAGTCACCTCA
>TCONS_00001380
ATGTCTGAAGCCCGCAAGAGGACCAGGAGACGATTCGGCGGACACGCGCACAAGAAACAGAAGGGCGCGCGCGAGCTGGAGGTGGGCGCGCAGGGCGTGCTGATCACCTGCAATATGAACGAGCGCAAGTGCACGAGCGAAGCCTTCAGCCTCCTCAGCGAGTACGCGGACGAGCTCTACGGGCCCGAGCAGgagAGTCTCAGTGAGGATGAGGAGCAGGAGGATGAGGATGCGGAGTGTGCACTACAGAGGGAAGTGTCTCAGCTGCAGTCGTCCAGTAAGGGGCGTCAGCAGCGCTTCAGTGCGGTGGACAGCGGCGCCAACAACGTGGTGTTCATCCGCACTCATGGCGTAGACCCCGCCCAGCTGGTGCATCACATCCTGTCTGACCTCCACCTGACCCGGAAGAGGAAGTCGCGTGTGATCCTGCGCATGCTGCCAGTGAGCGCCACCTGCCGAGCGTTCCCGGAGGACATGCAGAAGCTGCTGAGTGTGTTCCTGCAGCGCTGGTTCCTTGCTCCGCGGCATGCTACCTTCCAGATCTGCTTCAAAGCCAGAAACAGCAGCCACAGCAAGAGGGAGGAAGTGATCACGtgtgtttcaggtctgGTTGGTCAGCTGAACCCGCTCAATAAGGTGGATCTGACCAATCCTGAGCTCTCCATCATCATCGAGATCATCAAGAGCGTCTGCTGCGTCAGCGTCGTCACCGACTACATGCTCTTCCGCAAGTACAACCTGCAGGAGGTGGCCAAAGAGCCGGCCAATCAGAACACAGGCTCACAGAAAACACCCAATCAGAACACAGACCCACAGGAAACACCCAGTCAGAACACAGACCCGCAGGAAACACCCAATCAGAACACAGACTCCAAAgaagcagccaatcagaacacagacCCACAGAAAACAGCCAATGAGAGCAAAGGTTCACAAGAATCAGCCAATCAGACGCAGGAGCACGGGAATGGAGAGCTGCAGAGTTCTGATGTTACCGTTGGCAACGGGGCAGAGGAGGCGGAGCCTGAGTGA

Function

symbol description
thumpd1 Predicted to enable RNA binding activity. Predicted to be involved in tRNA modification. Is expressed in female organism. Orthologous to human THUMPD1 (THUMP domain containing 1).

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0005575 cellular_component cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-1805 Predicted to enable RNA binding activity. Predicted to be involved in tRNA modification. Is expressed in female organism. Orthologous to human THUMPD1 (THUMP domain containing 1).

Ensembl:

ensembl_id ENSDARG00000100264

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001379 False 1362 mRNA 0.57 4 58981985 58985885
TCONS_00001380 True 1032 mRNA 0.58 4 58982100 58985671

Neighbor

gene id symbol gene type direction distance location
XLOC_000880 eri2 coding upstream 2534 58977262 ~ 58979451 (+)
XLOC_000879 NA coding upstream 5298 58975017 ~ 58976687 (+)
XLOC_000878 NA coding upstream 22528 58956066 ~ 58959457 (+)
XLOC_000877 trip10b coding upstream 46087 58922027 ~ 58935898 (+)
XLOC_000876 NA coding upstream 127608 58853170 ~ 58854377 (+)
XLOC_000882 CABZ01083166.1 coding downstream 4236 58990121 ~ 59000239 (+)
XLOC_000883 cdc37 coding downstream 21651 59007536 ~ 59014053 (+)
XLOC_000884 pin1 coding downstream 76718 59062603 ~ 59065951 (+)
XLOC_000885 MFAP4 coding downstream 82093 59067978 ~ 59072128 (+)
XLOC_000886 MFAP4 coding downstream 87318 59073203 ~ 59089598 (+)
XLOC_000874 NA non-coding upstream 199693 58778053 ~ 58782292 (+)
XLOC_000871 NA non-coding upstream 312910 58646685 ~ 58669075 (+)
XLOC_000888 FP015850.1 non-coding downstream 145407 59131292 ~ 59131406 (+)
XLOC_000889 NA non-coding downstream 151998 59137883 ~ 59138594 (+)
XLOC_000893 NA non-coding downstream 176080 59161965 ~ 59162831 (+)
XLOC_000894 NA non-coding downstream 262245 59248130 ~ 59251679 (+)
XLOC_000896 NA non-coding downstream 326645 59312530 ~ 59313528 (+)

Expression


Co-expression Network