CI01000030_01433149_01437563 (VPS4B.S, VPS4B, MGC82073)


Basic Information

Item Value
gene id CI01000030_01433149_01437563
gene name VPS4B.S, VPS4B, MGC82073
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 1433149 ~ 1437930 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_01433149_01437563.mRNA
ATGACGAATGTCAATTTACAGAAAGCCATTGATTTGGCAAGCAGAGCCTCGGAGGAGGACAAGGCGAAAAACTACCAGGAAGCTCTGCGCCTCTATCAACATGCAATCCAGTATTTTCTTCATGTGGTGAAGTATGATGCTCAGGGGGAAAAGGCCAAGCAGAGCATCAGAGCAAAGTGTGCCGAGTACCTGGACCGAGCGGAGCAGCTCAAGCAGTACCTGAAGAAGAAAGAGAGCGCACCGCCCTCCAAACCTGTCAAAGTTCCCCAGTCTGATGAGAAAGGAACCGACAGTGATGATGGGGATTCAGAGAAAAAGAAATTCAAAACTCAACTCCAGGGTGCTATTGTCATGGAGAAGCCCAACATTAAGTGGGATGATGTTGCTGGTTTGGAAGGAGCCAAGGAGGCCCTTAAAGAAGCAGTCATCCTGCCAATCAAATTCCCTCATCTTTTCACTGGGAAAAGGACTCCATGGAGAGGGATTCTGCTCTTTGGCCCTCCGGGAACAGGGAAGTCCTACCTGGCCAAAGCAGTGGCTACCGAGGCCAATAACTCCACGTTCTTCTCCATCTCATCATCAGATCTGGTGTCCAAGTGGCTGGGAGAGAGCGAGAAGTTAGTGAAGAATCTGTTCAGTTTGGCTCGGGAGCACAAGCCTTCAATCATATTCATTGATGAGATTGACTCCATGTGCGGCTCGAGAAACGAGAACGAGAGCGAAGCGGCCCGCAGGATCAAGACCGAGTTTCTGGTCCAGATGCAAGGTGTAGGAAATGACAACGAAGGAATTCTGGTCCTTGGCGCGACCAACATCCCCTGGACGCTGGATTCTGCGATCAGGAGACGGTTTGAAAAGCGCATCTACATCCCTCTTCCTGAGCAGCCGGCTCGCTCCACCATGTTCAAGCTGCACCTCGGCTCCACCCCCAATAGCCTCAACGAAGCTGATTTCATCGCACTCGGAAAGAATTCCGATGGGTATTCGGGTGCTGACATCAGCATCGTCGTTCGCGACGCCCTCATGCAGCCCATTCGCAAAGTGCAGTCCTCGACTCACTTCAAAAAGGTCAGAGGAAAGGCATGGAACAACCCCGATGATGACGTGGATGACCTCTTGACGCCCTGCTCTCCAAACGACCCAAACGCAATTGAGATGACCTGGGTGGACGTGCAGAGCGATAAACTCCTGGAGCCGATAGTTAGCTTGGAGGACATGCTCAGGTCACTCGAGAAGACCAAGCCCACCGTGAACGAGGAGGATCTGGTGAAGCTGAAGAAGTTCACTGAGGACTTTGGCCAGGAGGGCTGAATTTTTGCATTATTGTGGCATTTATTTATATTTTCCACCATTATGTTTACAAAGTTCTTTCTGCATCTTTTATTTTTCAAACTCTTCATTTTCTGACATTTTCTGGGGGTGAAACATTTTTTCAACTGAGCTGGCTTGATATTGTCCTGAACATAACCGATCAGTGGTTATGATTTTGAGGATGATTAAGCATCAGCAGCCATTTGAAACAAATCAGTTACTAAAGACCTTCTTAACTTGAGGTTTGTTGCAAATGGACGCTAAAGTTTATACCAAGACTTTTGGGAGAGGAAAACAAAAGTATTTTTATGTACTTTAATGGCTGGCCACTTTTGTACCTCATTCCTAAATAAGACTTTTGCTTAAA

Function

symbol description
vps4b Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Acts upstream of or within odontogenesis. Predicted to be located in late endosome membrane. Predicted to be active in nucleus. Is expressed in ceratobranchial 5 primary tooth; pharyngeal arch 3-7; and pharyngeal pouch. Orthologous to human VPS4B (vacuolar protein sorting 4 homolog B).

GO:

id name namespace
GO:0032510 endosome to lysosome transport via multivesicular body sorting pathway biological_process

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_01433149_01437563.mRNA True 1678 mRNA 0.48 11 1433149 1437930

Neighbor

gene id symbol gene type direction distance location
CI01000030_01426277_01431670 ANKRD29 coding upstream 1479 1426277 ~ 1431670 (+)
CI01000030_01410955_01422296 TTC39C coding upstream 10415 1410955 ~ 1422734 (+)
CI01000030_01390854_01409470 NA coding upstream 23626 1390854 ~ 1409523 (+)
CI01000030_01384095_01386916 NA coding upstream 46213 1384095 ~ 1386936 (+)
CI01000030_01360575_01378361 OSBPL1A coding upstream 54082 1360575 ~ 1379067 (+)
CI01000030_01453143_01466193 NA coding downstream 15213 1453143 ~ 1466278 (+)
CI01000030_01480370_01481206 IER5 coding downstream 42108 1480038 ~ 1481702 (+)
CI01000030_01504763_01508773 TAL1 coding downstream 66768 1504698 ~ 1509004 (+)
CI01000030_01514203_01515696 PDZK1IP1 coding downstream 73715 1511645 ~ 1516475 (+)
CI01000030_01636207_01648294 TM2D1 coding downstream 198277 1636207 ~ 1648603 (+)
G157572 NA non-coding upstream 155087 1277295 ~ 1278062 (+)
G157528 NA non-coding upstream 162890 1267594 ~ 1270259 (+)
G157581 NA non-coding upstream 183360 1249527 ~ 1249789 (+)
G157567 NA non-coding upstream 221428 1211503 ~ 1211721 (+)
G157559 NA non-coding upstream 236952 1195850 ~ 1196197 (+)
G157631 NA non-coding downstream 29292 1467222 ~ 1467855 (+)
G157649 NA non-coding downstream 55972 1493902 ~ 1518773 (+)
CI01000030_01683292_01689297 NA non-coding downstream 164600 1682016 ~ 1689371 (+)
G157853 NA non-coding downstream 383358 1821288 ~ 1821735 (+)
G157856 NA non-coding downstream 385774 1823704 ~ 1823918 (+)
CI01000030_01003310_01003776 NA other upstream 426462 1003114 ~ 1003795 (+)
G157227 NA other upstream 1076666 327649 ~ 356483 (+)
G157108 NA other upstream 1286296 116156 ~ 146853 (+)
G157076 NA other upstream 1415393 12878 ~ 17756 (+)
G157726 NA other downstream 198937 1636867 ~ 1638227 (+)
CI01000030_02277208_02282376 TM6SF2 other downstream 841183 2277208 ~ 2282743 (+)
G158416 NA other downstream 1157946 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 1575526 3018776 ~ 3043773 (+)
G159685 NA other downstream 2993870 4431800 ~ 4488526 (+)

Expression


Co-expression Network