CI01000030_01972795_01974531


Basic Information

Item Value
gene id CI01000030_01972795_01974531
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 1972795 ~ 1975434 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_01972795_01974531.mRNA
CGCCATCTTGCGGACATTCTGATATTGCGCCCAAAGAAATTGACCTCAAAGTGGTCATCTGGCCTGTTCACTTGTACAGGTGGTCTGAAAGTCATTCTTTGTCTGTTTGCATCTAGAGTTTCATGGAGATCTGGTCGGATGACAGCTGGAACTGTGGTTATAACCGGAGGAATTCTCGCAACGGTGATACTCCTGTGTATCATTGTCGTGCTGTGTTACTGTCGCCTTCAGTATTATTGCTGTAAGAAGAATGGATCCGATCCAGATGCTGTTTGCCCACAGCCCCAGTTTGCCTGCAACGCATGCAGCATGTCCCGGGTGGACGGGATCGCTTCCACCCCGCTCTCCCTGTCACCGGAGCCCACGCCACCGCAGAGCTTCTGCCCCTCCTGCTCCCCATACAGCTCTCCATTTTACATCAGCACCATGGACGAAACGCGGAACGGGGGCGAACGGATCACTTACATGCCGTCCCACTACAACAGCTCGTCCCTGTCTCTCACCCTTCCTGCGTCATTGAGCTCTCGATGCCGACCAGACCTCTACTCCAACACACGTGCCATAAGCACTGATGTCTGATCAGTGGCATCCACCAGAAACACCCCTAATGTTTCTTCTGTATACCTGAGCGTTATAGACAGAACAGAGTGAATGGGGACCAAAGGACAATGACTCAGTTTTTACATTGTATCTGTCTAGAAGTAAATTGAAATCAATAATCATATATAATGTTTTATAGAAATTGATACAAATGTGTTCTTCCTGAATTTATTTGACTCTAAGGGATAGTTCACCCAAAAATGAAAATTCTGCCATCATTCATTCACCCTCAAGTTGTTCCAAACCTGTATGAGTTTCTTTGTTCTGTTGAACACAAAAGAAGATATTTTATAGAATGTTGGTAACCAAACAGTTAATGGTCCCCATTGACTTCCAAAGTATGTAAAAAAAAAAAAAAAATACTATGGTAGTCAATGGGGACCAGCAACTGTTTGGTTACCGACATTCTTCAAAATATCTTCTTTTGTGTTCAACAGAAGAATGAATGTCCTACAGGTTTACAATGATAAAATTAAAAAAATTTGGGTGAACTATCCCTTTAACACTGAAAAATATTTTATAAATCTGTATTTTTGTCCTGTTTTCAAATGAGAATATTTAAGCATTCTTAAAACAAGATAAATATACGTAAGAATCAAAGCTGTGCAAGATAAGGCGTGTTTTCAGAGAATATATCTTGAATTGAGTTTATTTTGAATTTTTTTCTTGTTTTAGTAGACTTCAGTAGTTTAGATTAAAGTTAGATTTGTGCTTAAAACAAGAAAAAAATCTGCCATTTTTCAAAAACAATTTACAAAAATAAAAATAAAATAAAAGGAGGAATAAAGGAACAAAGTAAAAACAAACAAAAGTAAATATCAAAAAATAAACAATAAAATAAAACTAAAGAAAAAAATAAACATTTTGAAAAACAAACATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_01972795_01974531.mRNA False 1482 mRNA 0.38 2 1972795 1975434

Neighbor

gene id symbol gene type direction distance location
CI01000030_01945306_01955404 NA coding upstream 17391 1945306 ~ 1955404 (+)
CI01000030_01932035_01939204 AXDND1 coding upstream 32875 1932035 ~ 1939920 (+)
CI01000030_01920523_01930701 NA coding upstream 41795 1920523 ~ 1931000 (+)
CI01000030_01912241_01917759 RAB3C, RAB3B coding upstream 54018 1912241 ~ 1918777 (+)
CI01000030_01902669_01906805 NA coding upstream 65564 1902669 ~ 1907231 (+)
CI01000030_01985397_02017638 GPR52 coding downstream 9963 1985397 ~ 2018194 (+)
CI01000030_02025674_02036478 NA coding downstream 47865 2023299 ~ 2037947 (+)
CI01000030_02039525_02050052 RABGAP1L coding downstream 62864 2038298 ~ 2050230 (+)
CI01000030_02058151_02072387 RABGAP1L coding downstream 82413 2057847 ~ 2072510 (+)
CI01000030_02094695_02098284 RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB coding downstream 119261 2094695 ~ 2098757 (+)
G157855 NA non-coding upstream 62191 1910204 ~ 1910604 (+)
G157857 NA non-coding upstream 145761 1826741 ~ 1827034 (+)
G157856 NA non-coding upstream 148877 1823704 ~ 1823918 (+)
G157853 NA non-coding upstream 151060 1821288 ~ 1821735 (+)
CI01000030_01683292_01689297 NA non-coding upstream 288327 1682016 ~ 1689371 (+)
G158441 NA non-coding downstream 101092 2076526 ~ 2083232 (+)
G158412 NA non-coding downstream 110604 2086038 ~ 2090083 (+)
G158439 NA non-coding downstream 121060 2096494 ~ 2174147 (+)
G158397 NA non-coding downstream 129968 2105402 ~ 2159275 (+)
G158487 NA non-coding downstream 282792 2258226 ~ 2258504 (+)
G157726 NA other upstream 334568 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 966108 1003114 ~ 1003795 (+)
G157227 NA other upstream 1616312 327649 ~ 356483 (+)
G157108 NA other upstream 1825942 116156 ~ 146853 (+)
G157076 NA other upstream 1955039 12878 ~ 17756 (+)
CI01000030_02277208_02282376 TM6SF2 other downstream 303679 2277208 ~ 2282743 (+)
G158416 NA other downstream 620442 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 1038022 3018776 ~ 3043773 (+)
G159685 NA other downstream 2456366 4431800 ~ 4488526 (+)
G159816 NA other downstream 2541344 4516778 ~ 4517381 (+)
CI01000030_02104123_02108608 MARCH2.S, MARCH2 coding downstream 62066 2104123 ~ 2109882 (+)
CI01000030_02113302_02119860 HNRNPM coding downstream 70900 2112957 ~ 2120066 (+)
CI01000030_02161055_02163914 POLR2E coding downstream 118706 2160763 ~ 2163914 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020331 FAM163A coding NC_007133.7 CM002906.2 17286841 ~ 17300617 (+)