CI01000030_02039525_02050052 (RABGAP1L)


Basic Information

Item Value
gene id CI01000030_02039525_02050052
gene name RABGAP1L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2038298 ~ 2050230 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_02039525_02050052.mRNA
GTTTATGAGGCAGCATTTCATTTTCATGCACACTGCGAGAAGCGAGAGTGATGGGGGTGAGAGGGAGGGATGCAAAGAGAGGAAGGGAGCAACAGTGAAACAGCCCGCTGAACTCAATCATACACCATGGTGTGATTAACCCCATACTGTGACAAAATTACAGCTTCGAGTCTTTTTGTTGCTGTTGCAAAACACACCAATATGGCACTCACTGTAAAAAATGCAGATTTTATATATTCTCATCTAAAGGTCGTTGCTGAGCAAAGGTCAGAGCTTGCTATGGTGTGACATGCAGCTTATTATTAGGGTTGCAATGATCAAGAAGTTATGGCTGTTTCTGATACCTGATAACAGCTGGCTGGTATGACGATTGAGATTTTTCCTGTTCATATTTAGTTGTGAATTGAAATCAAATCAAATCATGGAATATATGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAATATATATATAATATATTCATATACACACACACACACACACACACACACATACTGCTATTTAAAAGTTTGGGATTGAAATGTGATTTATTTTTATTTTATTTTTTTTTTGGAGATTTTTTGGTTTGTTTTTAAAAGAAGTGTCTTCTGATCCCCAAGGCTGCATTTATTTGATCCAAAATACAGTAAAAACAGAAATATTGTGAAATATTACTACAATTTAAAATAACTGTTTTCTATTTTAATATATTTTAAAATGTAATTTATTCCTGTGATGGTAAAGCTGAATTTTCAGCAGCATTACTCCAGTCTTCAATGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTTATTATTATTATCAATGTTGAAAACAGTTGTGTAAAAAATTTAGGATTCTTTGTTGAGTAGAAAGTTCAAAAGACCAACATTTATTTGAAATATAAAGATTTTTTTTTTTTGTCGTTGTTATAGTTAACTAAAACTATTATAATCATTTTCATTCAGTTAAATAAAGCTAAAATTAAATATAAACATTAAATGAAAACATTTTTGACCTGATAATATAAAATCTATATTATTATATATATTGTTATAATATACATTATTAAAAAATCTAATTAAAAAATATCAGTATAATATAATATAACCAAAATAAGTAATGGTTCTGTTTGTGCTTGCTCTTGATTAATCCATCAAGAAAAAAAGCACAATGTTATCGCTTCCACATATGCTGTGGTAACCTTCATGGGAAACGGCCTTTATGGCCTCGTTTGTCTCATGCATAAACGTAAACTGATGAAGCAGGTTACACAAATGGGTGTGCAGTGCTCTGTACTATTAGCAAGAATTTATATGGATCATGTATATGGAAAAATGGCAGAAAAGAAGGCTGCATTATTCATAGCGTGTGTTGAAGAGAAAAAGGAAGGTTACATTAATCAGGATGTACAAGAAATTTCAGCCCTGCTTTGCATGTCAGAGTCTGTTCATGTTCTCCATCATGTGACTGGAACGCTGTCTGCATTTGACTTGTTAATTCGATTTGCGTCCAGCTTTGAAGAGTGCGCTGTGCTGAGAATCTTCTTGACAAAATACACATTATACGTGCTCCTTCACTGTCCTCAGTTAAGCTCAACCTTGTATTCAAGTTTGTATTGGAGCTCAAAGGAATATGGATGGAGATCAAAGACCGTAGAGAAAATGACTATTACATGGGACTCCGCCCAGGAAGCCGTCATCACTAGAGACATCCATCGCACCTTCCCTGCTCACGACTACTTCAAAGACACGGGCGGCGATGGCCAAGATTCTCTTTACAAGATCTGCAAGGCTTACTCTGTGTATGATGAGGAGATTGGTTATTGCCAAGGCCAATCATTTTTGGCGGCCGTATTACTTCTGCATATGCCAGAGGAGCAAGCTTTCTGCGTGCTGGTGAAGATTATGTACAACTACGGTCTCCGAGAGCTCTACAAAAACAACTTTGAAGATCTTCACTGCAAGTTCTACCAGCTGGAGCGCCTGCTGCAGGAGCAGTTGCCGGACCTGTGGTCTCACTTCCAGGACCTGAACCTGGAGGCCCATATGTACGCGTCCCAGTGGTTCTTAACACTGTTTACCGCCAAGTTCCCTCTCTGCATGGTTTTCCATATCACCGACCTGCTCCTGTGCGAGGACGAAAGCGTAACATTTCGATACGGCACTGGTTTATTGCAGGACATAAGTGCATAAGTTTCATAAGTTTGCATTTAGTAATTGTTAATGTTAATTTCTAAATATACTGTGTATTGTTGTTATTTTAACCTTTGTTAGTTCATGATATCTAATACTAAACCTAAAGAAAAACTGTTAACAGATTGAATCTTTTTTTTATTTCTAGGTTTTTAAAATGTATTTCTTTTCTGTCTAA

Function

symbol description
rabgap1l Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to act upstream of or within positive regulation of GTPase activity. Orthologous to human RABGAP1L (RAB GTPase activating protein 1 like).

GO: NA

KEGG:

id description
K20284 RABGAP1, GAPCENA; Rab GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_02039525_02050052.mRNA True 2392 mRNA 0.36 8 2038298 2050230

Neighbor

gene id symbol gene type direction distance location
CI01000030_02025674_02036478 NA coding upstream 351 2023299 ~ 2037947 (+)
CI01000030_01985397_02017638 GPR52 coding upstream 20104 1985397 ~ 2018194 (+)
CI01000030_01972795_01974531 NA coding upstream 62864 1972795 ~ 1975434 (+)
CI01000030_01945306_01955404 NA coding upstream 82894 1945306 ~ 1955404 (+)
CI01000030_01932035_01939204 AXDND1 coding upstream 98378 1932035 ~ 1939920 (+)
CI01000030_02058151_02072387 RABGAP1L coding downstream 7617 2057847 ~ 2072510 (+)
CI01000030_02094695_02098284 RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB coding downstream 44465 2094695 ~ 2098757 (+)
CI01000030_02104123_02108608 MARCH2.S, MARCH2 coding downstream 53893 2104123 ~ 2109882 (+)
CI01000030_02113302_02119860 HNRNPM coding downstream 62727 2112957 ~ 2120066 (+)
CI01000030_02161055_02163914 POLR2E coding downstream 110533 2160763 ~ 2163914 (+)
G157855 NA non-coding upstream 127694 1910204 ~ 1910604 (+)
G157857 NA non-coding upstream 211264 1826741 ~ 1827034 (+)
G157856 NA non-coding upstream 214380 1823704 ~ 1823918 (+)
G157853 NA non-coding upstream 216563 1821288 ~ 1821735 (+)
CI01000030_01683292_01689297 NA non-coding upstream 353830 1682016 ~ 1689371 (+)
G158441 NA non-coding downstream 26296 2076526 ~ 2083232 (+)
G158412 NA non-coding downstream 35808 2086038 ~ 2090083 (+)
G158439 NA non-coding downstream 46264 2096494 ~ 2174147 (+)
G158397 NA non-coding downstream 55172 2105402 ~ 2159275 (+)
G158487 NA non-coding downstream 207996 2258226 ~ 2258504 (+)
G157726 NA other upstream 400071 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 1031611 1003114 ~ 1003795 (+)
G157227 NA other upstream 1681815 327649 ~ 356483 (+)
G157108 NA other upstream 1891445 116156 ~ 146853 (+)
G157076 NA other upstream 2020542 12878 ~ 17756 (+)
CI01000030_02277208_02282376 TM6SF2 other downstream 228883 2277208 ~ 2282743 (+)
G158416 NA other downstream 545646 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 963226 3018776 ~ 3043773 (+)
G159685 NA other downstream 2381570 4431800 ~ 4488526 (+)
G159816 NA other downstream 2466548 4516778 ~ 4517381 (+)

Expression


Co-expression Network