CI01000030_02277208_02282376 (TM6SF2)


Basic Information

Item Value
gene id CI01000030_02277208_02282376
gene name TM6SF2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2277208 ~ 2282743 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_02277208_02282376.mRNA
AGTTTTCCTTCACATGTGTCATTGACCTCACGAGCGCTCTAGAATATGATGGCTTCGCCTCAGGATTCATGGAGTTCTACCAGAAAACGGGGGAGCCGTATCTCGGCACACCCTATGCTATCATGATGTGCTATTGGGATGGTGTAGTGCACTTTATCATCTACCTGATACTGGTACACCGCATGTCAAACAGGAAACAATATCGCACATTGGGGCTTTTTTGGGCTGGATCACTGTGCGCCAACATGATTGTGTTTGTACCTGGAATTGTAGTTGGTAAATATGGCTCAGAGATCCGTCCTGCCTTCTGGCTCAACATGCCCTTTTTGTTGGTGCCCATATGGGGAGCGGTGTCCCTGTTCTCCAGGCCAAGGGATAGGCCTATGCCTTTTGTGGGTGCATCCAAGGTTGAACGTGAGCAGAAAAAAGCTTTAATATGGCGCCCCCTGGACCTGCTCTTTGTGGTTTATCTAGTGGCTGCCATGGGATTCACTGTCTTTAGAGGACTGGCAGTTCTTGATTGCCCGTTGGAAATCCTCAACAGATATGTGACAGAATATGAACCTTATCTGAAGGATCCCGTGGGCTTCCCCAAAGTTATGATGTTGCTGCTCCTATTCCATGCGCTTCCAATGCTAGGTTCATTTGCATATGGGCTGTGCACACCTGGCTGCACTTGGATGCTTGATTGGACGGTATATTTTGCAGGTGCCATTTTACAGTGCCAGTGGTCTCATATCGGAGCATCCCTGCACCCACGCACTGCAGAAATGTACAGGATTCCCACCTCGGTCCTGGTGCCCATCCTCCTTCTCAACCTGCTGTATGCAGTCGGTCCTGTGCTGCTCGCCCTGCGTTGCAAACGAGAGCCAGACTACTTCCTTTCCATCGCACCTGTGGGCCAAACTAACAATGAGAAGAAACTGCGTTAAACCGACTAAGAAAACATCAACTTTAAAGGGATAGTTCACACAAATTTTGAAATTCTGTCATCATTTACTCAAACTAGGTGAACTAATCCTTTAGAAAACATGTCAAAACAGATTTACTGTATTTAATGGGCACAACAGTGCTTGGCAATTACATCCAGTAGGTTCCTGTTAATTTGGTAATTAAGACAAGACCTTTATCATTGCAGTTTATTTGCCTTCTGTTCACTACTATAAAGATCTGTTGTGTTTCCTTATTCCAGTGCATTTTCCTAGTTCTATCTGTCTGTTCCACACAAATATCAGCTACATCCTAAATTATATAAATGTCAGAACTTCTTTCTTGAATAATTGGCTGGTCTCATAGGTA

Function

symbol description
tm6sf2 Acts upstream of or within lipid homeostasis and regulation of response to endoplasmic reticulum stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Is expressed in intestine; liver; and posterior intestine. Used to study fatty liver disease. Orthologous to several human genes including TM6SF2 (transmembrane 6 superfamily member 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_02277208_02282376.mRNA False 1299 mRNA 0.45 8 2277208 2282743

Neighbor

gene id symbol gene type direction distance location
CI01000030_02260437_02262817 NA coding upstream 14391 2260380 ~ 2262817 (+)
CI01000030_02256592_02257308 NA coding upstream 19619 2256530 ~ 2257589 (+)
CI01000030_02161055_02163914 POLR2E coding upstream 113294 2160763 ~ 2163914 (+)
CI01000030_02113302_02119860 HNRNPM coding upstream 157142 2112957 ~ 2120066 (+)
CI01000030_02104123_02108608 MARCH2.S, MARCH2 coding upstream 167326 2104123 ~ 2109882 (+)
CI01000030_02289500_02291562 HAPLN4, HPLN4 coding downstream 6757 2289500 ~ 2292428 (+)
CI01000030_02423347_02426071 NA coding downstream 140025 2422768 ~ 2426301 (+)
CI01000030_02452403_02456555 NR2C2AP coding downstream 169660 2452403 ~ 2456871 (+)
CI01000030_02466855_02469633 NA coding downstream 183842 2466585 ~ 2470573 (+)
CI01000030_02472528_02477483 NA coding downstream 189785 2472528 ~ 2477483 (+)
G158490 NA non-coding upstream 15365 2261553 ~ 2261843 (+)
G158488 NA non-coding upstream 17754 2259229 ~ 2259454 (+)
G158487 NA non-coding upstream 18704 2258226 ~ 2258504 (+)
G158439 NA non-coding upstream 103061 2096494 ~ 2174147 (+)
G158397 NA non-coding upstream 117933 2105402 ~ 2159275 (+)
G158508 NA non-coding downstream 21754 2304497 ~ 2312470 (+)
G158548 NA non-coding downstream 143751 2426494 ~ 2426775 (+)
G158555 NA non-coding downstream 164266 2447009 ~ 2447452 (+)
CI01000030_02531026_02532411 NA non-coding downstream 228058 2530509 ~ 2534232 (+)
G157726 NA other upstream 638981 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 1270521 1003114 ~ 1003795 (+)
G157227 NA other upstream 1920725 327649 ~ 356483 (+)
G157108 NA other upstream 2130355 116156 ~ 146853 (+)
G157076 NA other upstream 2259452 12878 ~ 17756 (+)
G158416 NA other downstream 313133 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 730713 3018776 ~ 3043773 (+)
G159685 NA other downstream 2149057 4431800 ~ 4488526 (+)
G159816 NA other downstream 2234035 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 4917192 7200104 ~ 7202485 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location