CI01000030_02452403_02456555 (NR2C2AP)


Basic Information

Item Value
gene id CI01000030_02452403_02456555
gene name NR2C2AP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2452403 ~ 2456871 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_02452403_02456555.mRNA
TTGTTCTGAAGCCAGTTGCCCAAGGTGAATCCCAGTGGGTTGTCTTGGAGTTTCCACAGTCTGTGAAAGTATCAGAGCTCAGACTACAGTTCCAAGGAGGGTTTTCAGGAAAGTCTTGTAAATTAGAAGGTTCTGCCAAAGAAGAGGATCTCAAATATATTTTAGACTTCTATCCAGAGGACAACAACTGTCTACAAATATCCTTCCACATGATTGACTGTCATTTGAACTCCACCAGAGTCAGTGGACATTTCCAGTGCAGTGGCCTTCTACACCTTGTTTTCTGTCCATTCCTGGCCAATGGCCTAATTGCCCTCGTCTTCATTTTATCCCAAGCATATAAAATCCTTGACTCTTCACCCACAGTTTTCCCATTCAAGATGCCCCTTTGGTGCAGAGGCTGAAAATAGTGTTTGAAAACAGTGCTGACTTTTTTGGAAGAATAATTGTTTACACATTGGACATCCTGGGGGAAAAGGTTTTGTAATGTTTTGAGAAAAGGACAGAGAGGAAGTATGAAGAGGCGGGAATGCCAACCAGCTTTTCCCCCAAGTTTTCACCTCTAGATGTGGAGTTTATTCCTACCTACTCACAGGGAACGCATCAACTGATGCTACTTTTGATCACATCTAATTTCTACAGAGGTTCTACAGATTATATTAACGTGCCTTTTCAGGTCAACACACATGAACTGCATATATGTAAAAGTGTTTTTTAATA

Function

symbol description
nr2c2ap Predicted to be located in nucleus. Orthologous to human NR2C2AP (nuclear receptor 2C2 associated protein).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_02452403_02456555.mRNA True 720 mRNA 0.41 4 2452403 2456871

Neighbor

gene id symbol gene type direction distance location
CI01000030_02423347_02426071 NA coding upstream 26102 2422768 ~ 2426301 (+)
CI01000030_02289500_02291562 HAPLN4, HPLN4 coding upstream 159975 2289500 ~ 2292428 (+)
CI01000030_02277208_02282376 TM6SF2 coding upstream 169660 2277208 ~ 2282743 (+)
CI01000030_02260437_02262817 NA coding upstream 189586 2260380 ~ 2262817 (+)
CI01000030_02256592_02257308 NA coding upstream 194814 2256530 ~ 2257589 (+)
CI01000030_02466855_02469633 NA coding downstream 9714 2466585 ~ 2470573 (+)
CI01000030_02472528_02477483 NA coding downstream 15657 2472528 ~ 2477483 (+)
CI01000030_02531026_02532411 NA coding downstream 73638 2530509 ~ 2534232 (+)
CI01000030_02573116_02582804 GATAD2A coding downstream 116245 2573116 ~ 2582812 (+)
CI01000030_02620111_02632697 YJEFN3 coding downstream 163240 2620111 ~ 2632722 (+)
G158555 NA non-coding upstream 4951 2447009 ~ 2447452 (+)
G158548 NA non-coding upstream 25628 2426494 ~ 2426775 (+)
G158508 NA non-coding upstream 139933 2304497 ~ 2312470 (+)
G158490 NA non-coding upstream 190560 2261553 ~ 2261843 (+)
G158436 NA non-coding downstream 195773 2652644 ~ 2653106 (+)
G158434 NA non-coding downstream 198404 2655275 ~ 2655548 (+)
G158566 NA non-coding downstream 200102 2656973 ~ 2657187 (+)
G158567 NA non-coding downstream 201391 2658262 ~ 2658521 (+)
G157726 NA other upstream 814176 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 1445716 1003114 ~ 1003795 (+)
G157227 NA other upstream 2095920 327649 ~ 356483 (+)
G157108 NA other upstream 2305550 116156 ~ 146853 (+)
G158416 NA other downstream 139005 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 556585 3018776 ~ 3043773 (+)
G159685 NA other downstream 1974929 4431800 ~ 4488526 (+)
G159816 NA other downstream 2059907 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 4743064 7200104 ~ 7202485 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020341 nr2c2ap coding NC_007133.7 CM002906.2 18156000 ~ 18160269 (+)