CI01000030_02705058_02731134


Basic Information

Item Value
gene id CI01000030_02705058_02731134
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2701811 ~ 2731151 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_02705058_02731134.mRNA
TTATAAATAGACCCTGTCCTGATTTGATCTAACACCTTTTCTCTGATTTAGATAATTAGGCTGTGTGAGTCATAATGTTTCAGCACTGTCCCTTTGGATGAGCTGTCTGAGTGAAGAGGCATGTAGAGGTGTGTGTATGTGTGTGTGTGTGTGTGTGCATGTATCCTATCTGTGTGGGCTCTAATGTGTGAGCTGGGGGAGAGAAAATGGTGTAAAATGAACAACCGCAAACAAGCCAAAAACGCAAAAAGCTTTTTATTTGTAGAGCTCGGCGGATCAAGTGCATTACGTACATGTGTATTTCTTGTACATGTGTGAGTCCACGGCCAAACAAACGTGTGTGTATTGCGCCAGCCCACGTGGGTGTGTGCTGTTTTAGTAGGAGCTGAATCGATAACCTGAGGGCAGGGAGTGGAGACGCACAAGGAAATGCAATTCTCTGGTCGCCCACCTCTTCCTGTCCCGCCCCCTCACCAGCAGCCCACAGACCAGCTCGGCCTCTAAAAAACCTGTTTGATTGGGGGAGAGGACATGAAACCAAACAAACATGTGATGAGATGGAGGGATGCAAAGTGGCCGTAAATCAAAGAAGGTTTGCTGGGAAATGCTGGGTGACACACACACTGATATCCTGGCACAACAACACCGCCTTGTTTGCTAACCCTCCTGAATTGCCTAACAAACCAGAATTAATTTTGGCTTCTGATTCACTGCCATTGTTCTGTGCACAATAAGATAATGCACTTGAGTCAGCACCCTGAGCCCATGCCAAACGTCTGCCGTGAATTTCACTTGCGCAACATTACAGTTATGCATGTTTGACCTGATATTGTACTTCTCATGCATTTGGAATATGCCAAGAACATTACATATTTGTAAAATGAACTGACTTCCTGTGCTACAACCTTGTGTAACTCTTTTGAGGAAATCACTAAGCCAGCGGTTCTGTGGGTCACAGCACAAAAATGGGTCACAGGTCACAAAAAATGCAAACTGCAACTAATCATATAATTGTGCAAGGTTTAACTTGAGATATTTGTTTCTTTTGATGTCAAATCAACATCAAAATAATGGTATATTTTTGACTGTATTTTGGTGCAAATTCATCTAGCCAAAGTAGACAGATGCCATATGAACAGGTTGCGTGACATGCCCTCATAATTGAAAACCACAACAATAATATACACAATAATATACACCGATCAGGCATAACATTATGACCACTGACAGGTGAAGTGAATAACACTGATTATCTCTTCATCATGGCACCTGTTAGTGGGTGGGATATATTAGGCAGCAAGTGAACATTTTGTCCTCAAAGTTGATGTGTTAGAAGCAGAAAAAATGGGCAAGCGTAAGGATTTGAGCGAGTTTGACAAGGGCCAAATTGTGATGGCTAGACGACTGGGTCAGAGCATCTCCAAAACTACTGCTCTTGTGGGGTGTTCCTGGTCTGCAGTGGTCAGTATCTATCAAAAGTGGTCCAAGGAAGAAACAGTGGTGAACCGGTGACAAGGTCATGGGTGGCCAAGGCTCATTGATGCTCGTAGGGAGCGAAGGCTGGGCCGTATGGTCCGATCCAACAAACGAGCGACTGTAGCTCAGATTACTCAAGAAGTTAATGCTGGTTCTGATAGAAAGGTGTCAGAATACACAAACTACACTGCATAGCCACAAATCAGTCAGGGTGCCCATGCTGACCCCTGCCCACCGCCGAAAGCGTCAACAGTGGGCATGTGAGTATCAGAACTGGACCATGGAGCAATGGGAGAAGGTGGCCTGGTCTGATGAATAAAGTCTTCTTTTACATCACATGGATGGCTGGGTGCGTGTGCGTTGCTCATCTTTGGAACACATGGCACCAGGATGCAAGAAGGCAAGCCGGTGGAGGCAGTGTGATGCTTTGGGCAATGTTCTGCTAGGAAACCTTGGGTCCTGCCATCCATGTGGATATTACTTTGACACGTACCACCTACGTAAGCATTGTTGCAGACCATGTACACCCTTTCATGGAAACGGTATTCCCTGGTGTCTGTGGCCTCTTTCAGCAGGATAATGCTCCCTGCCACAAAGCAAAAATGGTTCAGGAATGGTTTGAGGAACACAACAACGAGTTTGAGGTGTTGACTTGGCCTCCAAATTCCCCAGATCTCAATCCAATCGAGCATCTGTGGGATGTGCTGAGCAAACAAGTCCGATTCATGGAGGCCCCACCTCGCAACTTACAGGACTTAAAGGATCTGCTGCTAACATCTTGGTGCCAGATACCACAGCACACCTTCAGGGGTCTAGTGGAGTCCATGCTTTGACAGGTCAGAGATGTTTTGGCAGCAAAAGTGGGACCAACACAATATTAGGAAGGTGGTCATAATGTTATGCCTGATTAGTGTATATGAAAAATGCTAAATTTACTGCACATTAGGTATAAGGTTAAGAGGGATTGTGTGTAAAATAATTTTTGAAATCATTTTAAAATAATTATGTTATTGCAAATAGTTCAAATAGATTACGTTACAATAATTTCTAGTTATATTGCTGTTTTTCTTTTACTTTATCCCCTTAAATCGTGACCATGAACATTGGGGTGACCATTGGTTTTGTCACCCCAGTGTTCAAGACATGGTTACGGTCTTTGATATAATATATCCACCAACACATACTGTACTGTGCATTGTACCACTAAAGTTCTCTAAAGACATTGCAGTGGCATAAACACACCAGTAGGGGTCTCCCACTGATCAGCGCACCTCTAGGGCAAGAGGAAAGGATGACGGCCTCTTGGGTAGAGTAGCTGATCCGGCGGAGGACAGCTGTCTAAGGCACGTTTCCTCTTTTTTTTTTCCCATGGTCACTCTACCTCGGGTACCTTGCACGGTATCCCTCATTCGCGGAAAGACCGAGCAGCTGCCCTCCCCCCTCAACCCCCTTCACCGTGTGTTAGTCATTCCTTCATCTGCCCCCTTTGCACTCACACATGCCCATTCAACCTTCCACCCACTCACAAAGGAATGCTCGGAGAGGGGGGACCGGGAAAACCGTGCAAAAAGGCTGGAAGAAAATGACCATACAACACAAATAAAGATGGGACCAGAGAGGAGGAAAAAAGAAGAAGAGGGGAAAAGGGATTTTGAACACATGGAATAAGCACTAGATCCCCATTTTGTGCCTCATCCAGCACTCGAGCTTGTTTTGTCATGCGCCGAAACGGACCCTCAGGTCATGCTGCATGCCTTCACAACGCACACACATGGGCTTTTTGTCTGCAGATGGAAAACAGCATCAGGGCTCTCACTATCTGGAAGGAGAGTTCATTGTGAACAATATATGTTCACGAAGGCCAAACGATATGTGCATTCAGAACATTCCTTTGATGTCAATTAGGCATGAGGTATATGGGTTCGGCTTTGTGTGGGAGTCGTTTGAACTCAGTCCACACAAGCCAGGGCAGGTGGTGTTGACAGAGGACATAATGACCCCTCTTAGGCACAGGTGGCCTGGAGCAAGGCCTCTCCTCTCTGAGGTATCCTATGAAATAGAGATGGAACATGCAAGCATTACTATTTCAAGCGAAGTACAGATCACTCTAGGACGTTCCATACTGCCAGTAATCCATGCGGTGGGAAGGGTAGCCCACCAAAACTTTGTCCCCACATTCCAGCCTATGCAGTGGTTTAGAACATATGGACAAAATGTTGAGATCTTCATGGGAAGCTATTTTCCAAACCATGGGAAGTATGATTGGCAGTGGCGAGTCATAAACCAAGCCAGCCAGCTCATAAAAAGTAAATCAGGAAAATGTGACCGAGGCCTCAAACATAGCCTGGCCGAGTCTCGCTGGAGTGTTCATGGCCAGCTGCTCCTCTGTGATGCCCAGGGCATTGCTAATACCAATGCTGATGCCCACTCTCTTTTCATACAATCAAGCTTAGTCATGACACCAGGACCCACAAAACCACAATGGTTGAGTGAGTCACATGATGGTGAAGCCATGTTTCTCCCTGGAAATGCTGGATTCTCATTCATATTCTGGCAGAATCCTCTGGCAGTGAGGCTGCAGTTGCTCTCAGAGCAGGCGTGGTCACATGGGCAAAGGATGAGCGAAGAAGACAAGAAGAGGGTTGGGGGAGGGATGGAGAGAGGATGAGATGCTCGAAACGGAAA
>TU180058
ACTTTGACACGTACCACCTACGTAAGCATTGTTGCAGACCATGTACACCCTTTCATGGAAACGGTATTCCCTGGTGTCTGTGGCCTCTTTCAGCAGGATAATGCTCCCTGCCACAAAGCAAAAATGGTTCAGGAATGGTTTGAGGAACACAACAACGAGTTTGAGGTGTTGACTTGGCCTCCAAATTCCCCAGATCTCAATCCAATCGAGCATCTGTGGGATGTGCTGAGCAAACAAGTCCGATTCATGGAGGCCCCACCTCGCAACTTACAGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_02705058_02731134.mRNA False 4161 mRNA 0.46 6 2701811 2731151
TU180058 True 276 lncRNA 0.49 1 2703766 2704041

Neighbor

gene id symbol gene type direction distance location
CI01000030_02678940_02684491 NA coding upstream 17220 2678940 ~ 2684591 (+)
CI01000030_02641511_02650047 CILP2 coding upstream 51272 2641045 ~ 2650539 (+)
CI01000030_02620111_02632697 YJEFN3 coding upstream 69089 2620111 ~ 2632722 (+)
CI01000030_02573116_02582804 GATAD2A coding upstream 118999 2573116 ~ 2582812 (+)
CI01000030_02531026_02532411 NA coding upstream 167579 2530509 ~ 2534232 (+)
CI01000030_02843446_02856037 CBARPB coding downstream 112295 2843446 ~ 2856216 (+)
CI01000030_02891265_02897170 FSTL3 coding downstream 159960 2891111 ~ 2898442 (+)
CI01000030_02911153_02916952 NA coding downstream 178249 2909400 ~ 2916952 (+)
CI01000030_02919390_02954905 HCN2B, HCN2 coding downstream 188239 2919390 ~ 2955425 (+)
CI01000030_03018776_03042194 FGF22 coding downstream 287625 3018776 ~ 3043773 (+)
G158398 NA non-coding upstream 11470 2687543 ~ 2690341 (+)
G158567 NA non-coding upstream 43290 2658262 ~ 2658521 (+)
G158566 NA non-coding upstream 44624 2656973 ~ 2657187 (+)
G158434 NA non-coding upstream 46263 2655275 ~ 2655548 (+)
G158436 NA non-coding upstream 48705 2652644 ~ 2653106 (+)
G158660 NA non-coding downstream 145592 2876743 ~ 2876995 (+)
G158664 NA non-coding downstream 150690 2881841 ~ 2882156 (+)
G158676 NA non-coding downstream 177144 2908295 ~ 2908516 (+)
G158681 NA non-coding downstream 237506 2968657 ~ 2970230 (+)
CI01000030_03139836_03149991 NA non-coding downstream 418647 3139836 ~ 3150010 (+)
G158416 NA other upstream 87518 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 419441 2277208 ~ 2282743 (+)
G157726 NA other upstream 1063584 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 1695124 1003114 ~ 1003795 (+)
G157227 NA other upstream 2345328 327649 ~ 356483 (+)
G159685 NA other downstream 1700649 4431800 ~ 4488526 (+)
G159816 NA other downstream 1785627 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 4468784 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 5122934 7868292 ~ 7886228 (+)
G158585 NA non-coding downstream 2907 2706948 ~ 2707161 (+)

Expression


Co-expression Network