CI01000030_03060378_03062683


Basic Information

Item Value
gene id CI01000030_03060378_03062683
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3060327 ~ 3063096 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03060378_03062683.mRNA
ATATTTATACCGTGTTTAGCCAGCAAGAGCTCATCGACCGTCTTCTTCATCATGACCATCATCATCTCTCTGCTCCTGCTGGCCTCTCTGCTGCCACACCTGACCTTCACTGCTCGTATGAATGTGGGTATAGTGAACGGCAGAGAAGCAAAACCTCACTCCAGGCCTTACATGGTTTCTGTCCAAGCGAAGAAGCAACATATCTGCGGTGGATTCCTCATTTCTGATAGATTTGTCATGACTGCTGCACACTGCAGAGAAATTTTTTCAGTCCTGACAGTTGTGCTAGGTGCACATGACCTACAACAAACGAATTTGGACCGAATCAAAGTGGATTTCTACCATGAGCATCCGAACTATAACAAGAAAACCTTTCATAATGACATTATGCTTTTGAGGCTAGAAAAACATGTGGAACTAAACGACAATATCAAGTGGATATCCATACCAATGAAAGAAGATGATATCGAAGCAGATACTGTTTGTAGTGTCGCAGGATGGGGAAGTTTAAAAACAAATGGGACAGGAAACAACCGTCTCATGGAGACAGATGTGACAGTCTTGAATAACAAGGAATGTGAAACTCATGTGGATATAGTGAATGGCAAGGAAGCCAAACCCCACTCTAGACCTTACATGCTTTCTCTTCAGAAAAACATATCTGCGGTGGATTCCTCATTTCTGATGAGTTTATGTTGACCGTGGCACATTGCCGAAACAAGTAAGACTGTAGTTTTGTCTGAGCTAAAATCATGAATTTTCAATTAAATTCAATTCGCATTTATTTGTATAGCGCGTTTCACAATACATATCGTTTCAAAGCAACTTTACAGAAAAATGCATGTTTCTACATTACAATTTAGAGTAATCTGTTATCAGCGGTGACTGTGTCCAAGTAATGTCCATATGTCAAAAATATAAAGTACTAAAATAATACAAATCATGCAGTTAGCTAAAATCATGCATTCAGTTAAGCAGAAACAATGAGGTTGGTGTAAAAAAGGCCACACACAGGATATATTCATGTGCCTTAGTTTCTCTTGCGTTACAGTAAATTCGACACACACATATGCAAAACAGCATCTCTTCAGTGTACTGAGTTTGTGGTGACA

Function

NR:

description
Si:dkey-78l4.5 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03060378_03062683.mRNA True 1112 mRNA 0.40 5 3060327 3063096

Neighbor

gene id symbol gene type direction distance location
CI01000030_03058744_03059657 NA coding upstream 660 3055871 ~ 3059667 (+)
CI01000030_03018776_03042194 FGF22 coding upstream 18133 3018776 ~ 3043773 (+)
CI01000030_02919390_02954905 HCN2B, HCN2 coding upstream 104902 2919390 ~ 2955425 (+)
CI01000030_02911153_02916952 NA coding upstream 143375 2909400 ~ 2916952 (+)
CI01000030_02891265_02897170 FSTL3 coding upstream 161885 2891111 ~ 2898442 (+)
CI01000030_03066708_03068158 NA coding downstream 3561 3066657 ~ 3068230 (+)
CI01000030_03070497_03070798 NA coding downstream 7359 3070455 ~ 3071137 (+)
CI01000030_03086334_03087738 NA coding downstream 23238 3086334 ~ 3087800 (+)
CI01000030_03106589_03108355 NA coding downstream 43442 3106538 ~ 3108519 (+)
CI01000030_03110702_03118217 NA coding downstream 47059 3110155 ~ 3118410 (+)
G158681 NA non-coding upstream 90097 2968657 ~ 2970230 (+)
G158676 NA non-coding upstream 151811 2908295 ~ 2908516 (+)
G158664 NA non-coding upstream 178171 2881841 ~ 2882156 (+)
G158660 NA non-coding upstream 183332 2876743 ~ 2876995 (+)
G158585 NA non-coding upstream 353166 2706948 ~ 2707161 (+)
CI01000030_03139836_03149991 NA non-coding downstream 86702 3139836 ~ 3150010 (+)
G158767 NA non-coding downstream 100147 3163243 ~ 3163472 (+)
CI01000030_03172301_03180142 NA non-coding downstream 109398 3172255 ~ 3180536 (+)
G158774 NA non-coding downstream 143902 3206998 ~ 3207286 (+)
G158766 NA non-coding downstream 148687 3211783 ~ 3212301 (+)
G158416 NA other upstream 446034 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 777957 2277208 ~ 2282743 (+)
G157726 NA other upstream 1422100 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2053640 1003114 ~ 1003795 (+)
G159685 NA other downstream 1368704 4431800 ~ 4488526 (+)
G159816 NA other downstream 1453682 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 4136839 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4790989 7868292 ~ 7886228 (+)
G162088 NA other downstream 5174869 8237965 ~ 8239604 (+)

Expression


Co-expression Network