CI01000030_03066708_03068158


Basic Information

Item Value
gene id CI01000030_03066708_03068158
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3066657 ~ 3068230 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03066708_03068158.mRNA
ATATTTATACCATGTTTAGCCAGCAAGAGCTCATCGATCGTCTTCTTCATCATGACCATCATCATCTCTCTGCTCCTGCTGGCCTCTCTGCTGCCACACCTGACCTTCACTGCTCGTGTGACTGTGGGTATAGTGAACGGCAGAGAAGCAAAACCTCACTCCAGGCCTTACATGGTTTCTGTCCAAGCGAAGGAGCAACATATCTGCGGTGGATTCCTCATTTCTGATAGATTTGTCATGACTGCTGCACACTGCAGAAACAATTCTAAAGTTCTGACAGTTGTGCTAGGTGCACATGACCTACGACAAAAGAATTTGGACCGAATCAAAGTGGATTTCTACCATAAGCATCCGAAATTTACCAATGGATCCTTTCATAATGACATTATGCTTTTGAGGCTAGAAAAACATGTGGAACTAAATGACAATATCAAGGGGATATCCATACCAACGAAAGAAGATGATATCGAAGCAGTAACTGTTTGTAGTGTCGCAGGATGGGGAAGTTTAAAAACAAATGGGACAGTAAACAACCGCCTCATGGAGACAGATGTTACAGTCATGAATAACGAGAAATGTGAAAGTGAATGGGGGAAAGAAGACTATTCAGCTTCACAGATGATGTGTGTATATGGCGATGGAGGAAGCTGTGATGGGGATTCTGGAGGTCCTTTGGTTTGTGGAGACACTGCAGTCGGTGTAACATCCTTCGGGGACCCTGATAAATGTAATTCACCTGAACTACCTGAAGTTTATATTAAGATTTCAGCATATCTTCCATGGATAAAGAGCATTATTGGAAATGTTAATTGAATTAATTAAAGATGAAATGGGGTGATTTTTGTTTTTTGAAAGTTGAGTTGATTTCCCCTAAATCTTCATTCA

Function

NR:

description
Si:dkey-78l4.5 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03066708_03068158.mRNA True 885 mRNA 0.41 5 3066657 3068230

Neighbor

gene id symbol gene type direction distance location
CI01000030_03060378_03062683 NA coding upstream 3561 3060327 ~ 3063096 (+)
CI01000030_03058744_03059657 NA coding upstream 6990 3055871 ~ 3059667 (+)
CI01000030_03018776_03042194 FGF22 coding upstream 24463 3018776 ~ 3043773 (+)
CI01000030_02919390_02954905 HCN2B, HCN2 coding upstream 111232 2919390 ~ 2955425 (+)
CI01000030_02911153_02916952 NA coding upstream 149705 2909400 ~ 2916952 (+)
CI01000030_03070497_03070798 NA coding downstream 2225 3070455 ~ 3071137 (+)
CI01000030_03086334_03087738 NA coding downstream 18104 3086334 ~ 3087800 (+)
CI01000030_03106589_03108355 NA coding downstream 38308 3106538 ~ 3108519 (+)
CI01000030_03110702_03118217 NA coding downstream 41925 3110155 ~ 3118410 (+)
CI01000030_03129738_03130913 NA coding downstream 61400 3129630 ~ 3131568 (+)
G158681 NA non-coding upstream 96427 2968657 ~ 2970230 (+)
G158676 NA non-coding upstream 158141 2908295 ~ 2908516 (+)
G158664 NA non-coding upstream 184501 2881841 ~ 2882156 (+)
G158660 NA non-coding upstream 189662 2876743 ~ 2876995 (+)
G158585 NA non-coding upstream 359496 2706948 ~ 2707161 (+)
CI01000030_03139836_03149991 NA non-coding downstream 81568 3139836 ~ 3150010 (+)
G158767 NA non-coding downstream 95013 3163243 ~ 3163472 (+)
CI01000030_03172301_03180142 NA non-coding downstream 104264 3172255 ~ 3180536 (+)
G158774 NA non-coding downstream 138768 3206998 ~ 3207286 (+)
G158766 NA non-coding downstream 143553 3211783 ~ 3212301 (+)
G158416 NA other upstream 452364 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 784287 2277208 ~ 2282743 (+)
G157726 NA other upstream 1428430 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2059970 1003114 ~ 1003795 (+)
G159685 NA other downstream 1363570 4431800 ~ 4488526 (+)
G159816 NA other downstream 1448548 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 4131705 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4785855 7868292 ~ 7886228 (+)
G162088 NA other downstream 5169735 8237965 ~ 8239604 (+)

Expression


Co-expression Network