CI01000030_03139836_03149991


Basic Information

Item Value
gene id CI01000030_03139836_03149991
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3139836 ~ 3150010 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03139836_03149991.mRNA
ATTTCTCTCTCAGCATCTGTGAATGTGGGTATAGTGAACGGCGCAGAAGCCAGACCTCATTCAAGATCCTACATGGTTTCTATACAAAGAAATAATGAACACATATGCGGTGGCTTCCTTGTGTCTGAACAGTTTGTCATGACGGCTGCACACTGCTTTACAGAAGGAGAGAAGCTGACAGTTGTGGTTGGAGCTCATGATCACAGTCATGGTTCTAGTCGAGTGGATGACAAGTTCTACCACATCCACCCGGGGTATGAGTCAGAAAGTCTGCTAAATGACATCATGCTACTTCAGCTACATGTAAAGGTCAAAACAAGCAACAAAGTCAACTGGATCTCCATACCAAAGAAAGATAAGACATCAAGGCCAAAGCCAAATACAGTGTTGCAGGATAAAACCACCAATGGTACAGCGAGTGCTAAATTTATGGAGGTTGATGTCACAATCATTGATAAAAAAGCATGTCAGAAGTACTGGGGGAAAACATACTCCACCTCAAGGATGGTTTGTGCAGGTGGTCGTGGAGGATTTTGTCAGGGTGATTCTGGAGGGCCTTTGGTGTGCAACAAAGTTGCAGTTGGTGTCATTTCATTCAATCAGCCAAACAACTGTGACTCCCCTACATTACCCAATGTCTACACCAAGATTTCCAAATTTCTGCCTTGGATAAAATGTATTTTT
>TU180251
AAATAGTATAGCTGTTCAATTTTATTCGCAGCCTGTTTTCCCCTTCTCAGGGTGATTCTGGAGGGCCTTTGGTGTGCAACAAAGTTGCAGTTGGTGTCATTTCATTCAATCAGCCAAACAACTGTGACTCCCCTACATTACCCAATGTCTACACCAAGATTTCCAAATTTCTGCCTTGGATAAAATGTATTTTTTGAGGTGTGAAGCAAGAGC

Function

NR:

description
Si:dkey-78l4.5 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03139836_03149991.mRNA False 684 mRNA 0.43 4 3139836 3149991
TU180251 True 213 lncRNA 0.41 1 3149798 3150010

Neighbor

gene id symbol gene type direction distance location
CI01000030_03132339_03134173 NA coding upstream 5519 3132292 ~ 3134317 (+)
CI01000030_03129738_03130913 NA coding upstream 8268 3129630 ~ 3131568 (+)
CI01000030_03110702_03118217 NA coding upstream 21426 3110155 ~ 3118410 (+)
CI01000030_03106589_03108355 NA coding upstream 31317 3106538 ~ 3108519 (+)
CI01000030_03086334_03087738 NA coding upstream 52036 3086334 ~ 3087800 (+)
CI01000030_03157804_03158397 NA coding downstream 7642 3157633 ~ 3159327 (+)
CI01000030_03172301_03180142 NA coding downstream 22264 3172255 ~ 3180536 (+)
CI01000030_03185116_03188245 NA coding downstream 35080 3185071 ~ 3188312 (+)
CI01000030_03196185_03200757 NA coding downstream 45557 3195548 ~ 3200805 (+)
CI01000030_03202618_03204279 NA coding downstream 52582 3202573 ~ 3205060 (+)
G158681 NA non-coding upstream 169606 2968657 ~ 2970230 (+)
G158676 NA non-coding upstream 231320 2908295 ~ 2908516 (+)
G158664 NA non-coding upstream 257680 2881841 ~ 2882156 (+)
G158660 NA non-coding upstream 262841 2876743 ~ 2876995 (+)
G158585 NA non-coding upstream 432675 2706948 ~ 2707161 (+)
G158767 NA non-coding downstream 13252 3163243 ~ 3163472 (+)
G158774 NA non-coding downstream 57007 3206998 ~ 3207286 (+)
G158766 NA non-coding downstream 61792 3211783 ~ 3212301 (+)
G159234 NA non-coding downstream 91505 3241496 ~ 3241775 (+)
CI01000030_03018776_03042194 FGF22 other upstream 96063 3018776 ~ 3043773 (+)
G158416 NA other upstream 525543 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 857466 2277208 ~ 2282743 (+)
G157726 NA other upstream 1501609 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2133149 1003114 ~ 1003795 (+)
G159685 NA other downstream 1281809 4431800 ~ 4488526 (+)
G159816 NA other downstream 1366787 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 4049944 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4704094 7868292 ~ 7886228 (+)
G162088 NA other downstream 5087974 8237965 ~ 8239604 (+)

Expression


Co-expression Network