CI01000030_03172301_03180142


Basic Information

Item Value
gene id CI01000030_03172301_03180142
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3172255 ~ 3180536 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03172301_03180142.mRNA
ATATTTATACAGTGTTTTGCCATGAGAAATCAATGTCATCTTCATCATGACCATCATCATCTCTCTGCTCCTGCTGGCCTCTCTGCTGCCACACCTGACCTTCACTGTGAACGGCATAGAAGCCAAACCCCACTCCAGACCTTACATGGTTTCTCTTCAGAAGAACAGGAATCATATCTGTGGTGGATTCCTAATTTCTGATCAGTTTGTCTTGACTGCTGCACATTGCTGGGGCGGATCTGAGATTCTGACGGTTCTGGTTGGTGCTCATGATTTAAATAACATCAAGAGTTCAGATCGCATCGACGTGGAGTCCTACAAACAGCATCCAAACTATTTTTTCCTTTCTGAAAAGAATGACATCATGCTTTTGAGGCTACAGGAAAAAGTCAAACTAAGCAATGTTAAATGGATATCATTACCAAAGAAAGAAGAAGACGTGGGGACAGTTACTTTCTGTAGTGTTGCCGGCTGGGGAGGACAGGCAATTAAAGAGGGACCGACTAATCGTCTAATGGAGACAAATGTGTATATAATGAACAACACAGAATGTAGCAATAAATGGGGAAAGACCTACTACTCAGCCTCACAGATGATGTGCACACGTGGCCATGGTGGATCCTGCCGAGGTCCTTTGGTTTGTGGAAACACTGCAGTTGGTGTCACATCATTTGCATATGAAAAGCTCTGCAATTCACCTGACTATCCTAATGTGTATACTAAGATTTCATCATATCTTGAATGGATCAACAACATAGCTACAATTGAGAAGCAAACAACAGCGACTCCCCTACAAGACGCAATGTCTACACCAGACACCAGACAGACCGACAGCATAACTACAAATGAGAAACCAAGTGAGAGATTTGGTGCGGCCATATTGAAGTATCATCTCTTGTTAAGTGAGTGTCACGACAAAAGCTGCTTCGCGTTTCAGCACAACCAGAGTTAAAATCTACAGAGCCCCGCACATGACACGCAGGGAAAAAAAGTAAATCGTGCATACAGTTTACTAATTCGTTCCCTCGTTTTACTAAATCGTGCACACAATTTCCTAATTCATGCCCTCGTTTTTAGTAAATTGTGCACAATATAATAATTCGTTCCCTTGTTTTAAGTAAATCGTATGCACGATATAATAATTTGTTCTCTCATTTTTAATTAAACTGTGCATTCAGTTTCCTCAAGAGCTGAACCTGCTCCCTCCATTGGCGAGGCCTACAAAGAAGATGCAGCACCACGGGAGAGATAGCTATAGCTCTTAAACTGGGGCATTTAATATATGTTTTTCTTTCTGTCTGTGATGTGTTGCCACCGCCCTAATATACTTGCCCCTTGTGGAATTA
>TU180260
GCCAAACCCCACTCCAGACCTTACATGGTTTCTCTTCAGAAGAACAGGAATCATATCTGTGGTGGATTCCTAATTTCTGATCAGTTTGTCTTGACTGCTGCACATTGCTGGGGCGGATCTGAGATTCTGACGGTTCTGGTTGGTGCTCATGATTTAAATAACATCAAGAGTTCAGATCGCATCGACGTGGAGTCCTACAAACAGCATCCAAACTATTTTTTCCTTTCTGAAAAGAATGACATCATGCTTTTGAGGCTACAGGAAAAAGTCAAACTAA

Function

NR:

description
Si:dkey-78l4.5 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03172301_03180142.mRNA False 1346 mRNA 0.42 7 3172255 3180536
TU180260 True 277 lncRNA 0.42 3 3172494 3177964

Neighbor

gene id symbol gene type direction distance location
CI01000030_03157804_03158397 NA coding upstream 12928 3157633 ~ 3159327 (+)
CI01000030_03139836_03149991 NA coding upstream 22264 3139836 ~ 3150010 (+)
CI01000030_03132339_03134173 NA coding upstream 37938 3132292 ~ 3134317 (+)
CI01000030_03129738_03130913 NA coding upstream 40687 3129630 ~ 3131568 (+)
CI01000030_03110702_03118217 NA coding upstream 53845 3110155 ~ 3118410 (+)
CI01000030_03185116_03188245 NA coding downstream 4535 3185071 ~ 3188312 (+)
CI01000030_03196185_03200757 NA coding downstream 15012 3195548 ~ 3200805 (+)
CI01000030_03202618_03204279 NA coding downstream 22037 3202573 ~ 3205060 (+)
CI01000030_03218927_03220573 HSD11B1LA coding downstream 38391 3218927 ~ 3221005 (+)
CI01000030_03229393_03232355 NA coding downstream 48745 3229281 ~ 3232454 (+)
G158767 NA non-coding upstream 8783 3163243 ~ 3163472 (+)
G158681 NA non-coding upstream 202025 2968657 ~ 2970230 (+)
G158676 NA non-coding upstream 263739 2908295 ~ 2908516 (+)
G158664 NA non-coding upstream 290099 2881841 ~ 2882156 (+)
G158774 NA non-coding downstream 26462 3206998 ~ 3207286 (+)
G158766 NA non-coding downstream 31247 3211783 ~ 3212301 (+)
G159234 NA non-coding downstream 60960 3241496 ~ 3241775 (+)
CI01000030_03238201_03242662 NA non-coding downstream 61675 3237992 ~ 3242902 (+)
G159261 NA non-coding downstream 136425 3316961 ~ 3317302 (+)
CI01000030_03018776_03042194 FGF22 other upstream 128482 3018776 ~ 3043773 (+)
G158416 NA other upstream 557962 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 889885 2277208 ~ 2282743 (+)
G157726 NA other upstream 1534028 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2165568 1003114 ~ 1003795 (+)
G159685 NA other downstream 1251264 4431800 ~ 4488526 (+)
G159816 NA other downstream 1336242 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 4019399 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4673549 7868292 ~ 7886228 (+)
G162088 NA other downstream 5057429 8237965 ~ 8239604 (+)

Expression


Co-expression Network