CI01000030_03238201_03242662


Basic Information

Item Value
gene id CI01000030_03238201_03242662
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3237992 ~ 3242902 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03238201_03242662.mRNA
GTTTAAAAATAAAACCAAAAGGCATTCATCTGTTCTGACATCCAAACTGTTTTTTTTTTTTTTTTTTTTTTTTTAAATCATATTGTGAGGAAGTAGTGGGGGGCAGTGGGGACACTCTGGAAACAGTTGAAAGGAGGGTAACACATTTTCAGAAAGACTGTTTCCTGTGCTTTCTCTTGGCTCTACCTTAATGGATCACATGTGCTGAAATGATGTATTGTACAGAGAAACAAAGCGTTGAAAAACTACATAGGGACTACAAAAGGCAGAAAAAGATCCCTCTTTTTAAAAGCCATGAAGACATTGAGTGGAATTTTAGGGGGAAAGGGGCAATTAGCCGGGGCCTTGAAGCAACAGTGGGTGGCGAGAGTCTTACACCACAGATGGTACCAGTCAGCTGCTCTTGGTCCGCGTGGACACAGTGGTATGCTGCCTATGCAAACATGCAAACTCAAACAAATGAAGTCTGCCTATGCTTGTCCGGGAACAACAGTATGAGGACGGCCAAAACAGAGTCCCTCAGTCGGTACTCATTGCCATATACTTTTCCCCCCTACCCTCGAGAAGAAGGAAGATGCTCTCCGTTCTCTCACACTTTTGAGTTGGGGGTTGTGCCTCATCGATGTGTTGTTCGCAGATGTCCCACATTGAACATTCCTCTATGTTCTTCTCAGCTTTGTGAGCAGTGGGTTTTAATTGAGAATTTGGGAGATGAATGCAGCGCTGTGACACCGCTGCACATTTCAAAGGATCTCCGAATCTGGCAGCTGTAAACAAAGCAGATAAAAAAGATAAATGTTCTTGCATTGGGCCATACACAAATGATTAGTTGCCTACTTCAAAAGCGCCACACTGGGGGGGCTAAGAATGCTTTGCATGGCCCATTTGGGCATTAGACTTTCATGAATGTGCTAGATTGCTTAATTTTCTGTGCTCCTACAGCTTGCATACTGTAGATTTTAAGAGTGAACTACCCTTATGCATAGATAATGACTTTTTAAGTGCAGTTGGAA
>TU180792
CCGGCGTGTTTCGAATTATTGCATGGGCGTGGGGAGGATTTTATTTGTCTATCAGGTGGTATTGGGGGTGAACCCTTAAATCTGACAAATTGCTGAAAATTGCAGACATGCACTCAATCCTGTTTGGACGCTCTTGGCACATCTGGTTGTGATCTTGGCACAAAGGCTCCTCTGCAGAAGCCCCCCCAAACTCCACCTTCATCCACAGCTCATTGCCATATACTTTTCCCCCCTACCCTCGAGAAGAAGGAAGATGCTCTCCGTTCTCTCACACTTTTGAGTTGGGGGTTGTGCCTCATCGATGTGTTGTTCGCAGATGTCCCACATTGAACATTCCTCTATGTTCTTCTCAGCTTTGTGAGCAGTGGGTTTTAATTGAGAATTTGGGAGATGAATGCAGCGCTGTGACACCGCTGCACATTTCAAAGGATCTCCGAATCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03238201_03242662.mRNA False 1013 mRNA 0.43 4 3237992 3242902
TU180792 True 442 lncRNA 0.48 1 3242211 3242652

Neighbor

gene id symbol gene type direction distance location
CI01000030_03229393_03232355 NA coding upstream 5538 3229281 ~ 3232454 (+)
CI01000030_03218927_03220573 HSD11B1LA coding upstream 16987 3218927 ~ 3221005 (+)
CI01000030_03202618_03204279 NA coding upstream 32932 3202573 ~ 3205060 (+)
CI01000030_03196185_03200757 NA coding upstream 37187 3195548 ~ 3200805 (+)
CI01000030_03185116_03188245 NA coding upstream 49680 3185071 ~ 3188312 (+)
CI01000030_03253246_03261669 RGMD coding downstream 10344 3253246 ~ 3261943 (+)
CI01000030_03565934_03569916 EEF2B, EEF2L2, EEF2.1.L, EF2, EEF2 coding downstream 322883 3565785 ~ 3570730 (+)
CI01000030_03580764_03584676 HMG20B coding downstream 337862 3580764 ~ 3585255 (+)
CI01000030_03594936_03629403 UNC13A coding downstream 352034 3594936 ~ 3629485 (+)
CI01000030_03703231_03704355 NA coding downstream 459271 3701601 ~ 3704615 (+)
G158766 NA non-coding upstream 25691 3211783 ~ 3212301 (+)
G158774 NA non-coding upstream 30706 3206998 ~ 3207286 (+)
CI01000030_03172301_03180142 NA non-coding upstream 60028 3172255 ~ 3180536 (+)
G158767 NA non-coding upstream 74520 3163243 ~ 3163472 (+)
CI01000030_03139836_03149991 NA non-coding upstream 87982 3139836 ~ 3150010 (+)
G159261 NA non-coding downstream 74059 3316961 ~ 3317302 (+)
G159417 NA non-coding downstream 287895 3530797 ~ 3531025 (+)
G159418 NA non-coding downstream 288432 3531334 ~ 3531604 (+)
G159420 NA non-coding downstream 289891 3532793 ~ 3533268 (+)
G159433 NA non-coding downstream 302491 3545393 ~ 3547030 (+)
CI01000030_03018776_03042194 FGF22 other upstream 194219 3018776 ~ 3043773 (+)
G158416 NA other upstream 623699 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 955622 2277208 ~ 2282743 (+)
G157726 NA other upstream 1599765 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2231305 1003114 ~ 1003795 (+)
G159685 NA other downstream 1188898 4431800 ~ 4488526 (+)
G159816 NA other downstream 1273876 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3957033 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4611183 7868292 ~ 7886228 (+)
G162088 NA other downstream 4995063 8237965 ~ 8239604 (+)
G159234 NA non-coding upstream 436 3241496 ~ 3241775 (+)

Expression


Co-expression Network