CI01000030_03253246_03261669 (RGMD)


Basic Information

Item Value
gene id CI01000030_03253246_03261669
gene name RGMD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3253246 ~ 3261943 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03253246_03261669.mRNA
AGGAATATGTATATTCGCTGGGTCATGCAATGTAATATGCTCACAAATGTGGGGCAAAGAAAGAACCCTTTCTCCGCCCATCAGCCTTGTCAAGTCGTCTACTGGCATGAGGTGCTTGTTACAGTCTCAATGGATCCTCAAAATCATTTAAAACGCCTCACCGCCGATGAGCAGCAGTTGGAGAACTGCAATCAAACTGAATGGATTGGCATGGGGAGAAGCGGCACTCTCAACCTGGCTAAGCGGCAGCTTTGGAACTGGATTTGTTTTTTAGTGGTTTCTATGTGCCTGTTACTCCGACCAGTGTGCTGCCAAACATGTCGAATTCAGCGCTGTAATGCAGAGTACGTGGCCTCATTCTCACCCTCCGGTGGCTTGCAAGAGGAGGTGCTTCCAGATGTGGACTACTGCATCGCTTTGAGGGCCTACTCGTTGTGTACGCGCCGCACAGCTCGTGGTTGTAGGGGGGACTTGGTGTACCACTCGGCTGTATTCCGTATTAAAGAGCTCTTTGCACAGCACAACTGCTCAAGCGACGGCCCAACGTCGTCGGCTAAAGCACCCAGCACTTCCAAGCCGCCAGTGGTGGACGTCTGCAACTATGAAAGCAGGGTGCTCGCCTCAGGACCGGCGGCCCAACAGAAAAAGTATGGACATTGTGGACTATTCGGTGATCCTCACTTGCGGACTTTTAAGGATGAGTTCCAGACATGTAGGGTTGAGGGAGCCTGGCCGCTCATCCACAACCGATACCTTTCAGTTCAAGTCACAAACGTACCGGTGGTTGAAGGCTCCAGTGCTACGGCAACCAACAAGATAACCGTCATTTTCAAGTCCTATCATGACTGCACAGAGCAGAAGGTGTACCAGGCCACCACCGAGGACCTGCCGTCGGCGTTCCAGGACGGCACGCGGAGCGGCGGGAAAGGAGATGGCTTGTGGATTGTGGAGGGTAGCGGAGGTCTAGGTATACGGCAGGTGAAGATCCACGCTCGCTACCTGGGCTCGTCCATCATCGTGAGGCAGGTCGGTCGCTACTTGACTTTTGCCATCCGCATGCCTGAGGACTTGGCGGAGGAGAACGGAGGCCTGCAGCTGTGTCTGCACGGCTGCCCGCGCAGTGAGGTCATCAAAGCCCACGTGCTCAACCGGCAGCAGAGCCTGCGTCCGCCGCGACTCACGGGCAGCTGGTACGGGGAGGACGATGGCGGCGAGCTGCAGCCAGGCCTCTCGGCGCACGTGGACGTGTTGGAACGCGCAACCACAAAGTGTCGAGAGATGCTGCAGGTGGAGGATGTTTATTTCCAATCGTGCGTGTTTGATCTTCTCACGACAGGCGATCCGGAGTTCTCCATGGCTGCGTATGGCGCCCTGGAGGACCTTAAGGCACTTCCGCCCAGCACTCTGAAACAAAGTTTACCCAGGACTCCACACATTTATAGTAGAGGAACGATAGTTACACCTTCAGTTTTCACAGCGCTGGTTCTTCTGCTCCTGTTGAACTGAAGGAGCTGGTCTAGACGCCAGCTTGAAGATGGATACCCACCAGCCAGACTGTTCCTCCACCATGAAACCCTTTTGGAAAAACAATCAAACTGACTTCAAACTGTCTGCAAGAGACTGATCCGAATGGACTCATTTCCATTTAAACATGCAGTGTTTTATTCTTCAGAACGGATGATGGCACACTCCAGGCTTTCTGAATGTGAAATCGACAAAGGCGCTCGAATCTGGAAACAATGAAGGCAGCTAATCTGCATATCTTTTAGTTTATCACAGA

Function

symbol description
rgmd Predicted to enable coreceptor activity. Predicted to be involved in BMP signaling pathway. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural keel; axial chorda mesoderm; central nervous system; musculature system; and pharyngeal arch.

GO:

id name namespace
GO:0030509 BMP signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03253246_03261669.mRNA True 1780 mRNA 0.53 5 3253246 3261943

Neighbor

gene id symbol gene type direction distance location
CI01000030_03238201_03242662 NA coding upstream 10344 3237992 ~ 3242902 (+)
CI01000030_03229393_03232355 NA coding upstream 20792 3229281 ~ 3232454 (+)
CI01000030_03218927_03220573 HSD11B1LA coding upstream 32241 3218927 ~ 3221005 (+)
CI01000030_03202618_03204279 NA coding upstream 48186 3202573 ~ 3205060 (+)
CI01000030_03196185_03200757 NA coding upstream 52441 3195548 ~ 3200805 (+)
CI01000030_03565934_03569916 EEF2B, EEF2L2, EEF2.1.L, EF2, EEF2 coding downstream 303842 3565785 ~ 3570730 (+)
CI01000030_03580764_03584676 HMG20B coding downstream 318821 3580764 ~ 3585255 (+)
CI01000030_03594936_03629403 UNC13A coding downstream 332993 3594936 ~ 3629485 (+)
CI01000030_03703231_03704355 NA coding downstream 440230 3701601 ~ 3704615 (+)
CI01000030_03715463_03716370 NA coding downstream 452668 3714611 ~ 3717569 (+)
G159234 NA non-coding upstream 11471 3241496 ~ 3241775 (+)
G158766 NA non-coding upstream 40945 3211783 ~ 3212301 (+)
G158774 NA non-coding upstream 45960 3206998 ~ 3207286 (+)
CI01000030_03172301_03180142 NA non-coding upstream 75282 3172255 ~ 3180536 (+)
G159261 NA non-coding downstream 55018 3316961 ~ 3317302 (+)
G159417 NA non-coding downstream 268854 3530797 ~ 3531025 (+)
G159418 NA non-coding downstream 269391 3531334 ~ 3531604 (+)
G159420 NA non-coding downstream 270850 3532793 ~ 3533268 (+)
G159433 NA non-coding downstream 283450 3545393 ~ 3547030 (+)
CI01000030_03018776_03042194 FGF22 other upstream 209473 3018776 ~ 3043773 (+)
G158416 NA other upstream 638953 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 970876 2277208 ~ 2282743 (+)
G157726 NA other upstream 1615019 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2246559 1003114 ~ 1003795 (+)
G159685 NA other downstream 1169857 4431800 ~ 4488526 (+)
G159816 NA other downstream 1254835 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3937992 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4592142 7868292 ~ 7886228 (+)
G162088 NA other downstream 4976022 8237965 ~ 8239604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020379 rgmd coding NC_007133.7 CM002906.2 19640309 ~ 19646421 (+)
bowfin (Amia calva) AMCG00005884 rgma,LOC103371300 coding CM030142.1 CM030142.1 11838001 ~ 11863038 (-)