CI01000030_03703231_03704355


Basic Information

Item Value
gene id CI01000030_03703231_03704355
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3701601 ~ 3704615 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03703231_03704355.mRNA
CTATAAAAGGCTCAGCCTTAGCGAAGTCTTGCCCTCATACATGCCTTATTTAAACGAGTGGCCTAACTCAACCAAAGCACCCACTCTGATTTTAGAGTCATCCTGCTCTGATGTGGCCATAGGATGGTGCTGCACCCGCTCTCAACAATGCAAGCTGCACAATATTACTTTAAAATAAAGGTCTGTTTTAGGACACTTTCTTTAAAAAAAAAAAAAAAAAAAAAACTTCAGCCAATAATTTATGTGGTGAAATAGGCTTAACTGATCCCATTTTGTAACTATATACATTGCATTAATTGATAATGTTCACGATTCAAATAGTAAAAACTGGACCCTCCCTCTTACTCAGCTACAGCTGTGTGCTTATTTGGACTTGGACATTAATTTATTGCTCACCTTATCGCTCAGGTTGTTTTCGATTTTTTTTTCTCTGTGGTCCCTTGGGCAAAGAAATTGAATAAGCACTTTGTATCTCCCTAACCCAAACTGCCTCCTTAAATAGATATTTCTCTATCTCTGTTGGATATCTTTAGTAAAGCTGTGCAAATGCATAAAAAAAGGTGCTCGACTCTTTATCTCTCCTTCTGTCGCTGAAACAAGCAAACAAATAAAAGATTCCCTGCTTAAGTTGTCCACTAGCAATCTGTATAACAGTGGTGCCCTCACTCATCTGTTGCGTACAGTTTCACTCTCCTGCAGAAAGACTCGAAATGAAGCACATTTATCACAATTCATACTTTGGGCGGAAACTTCTGGGTTCCATTAAGTGCAGTTTAGGAAAAAATGGGTTTCTCAATTATAATGATCTAAAACATCAAACAGCGTATTTCCCCCTGCAAACTTAACGCAGCGAGAAACCTGGAGTGAAGCTTAAGAAAGATGTAACCCTATCTATCTGCAATATATCTCTTGTAAAGGGTCTCATAAGATTACAACCTAATATATACACACGTATACAAATGTAAAGTGTCAAGTACCCAAAATAGTCAACTCAAAGGTCAAAAAGAAAAATCAGATGACAAAATATTAAGACAATCCCAAAAATAAGAAAGAATATAATGCAAGTAAGACTGCCAATAAGGAAAAGCAGGCCTGTGAGAGCAGTCAGCCCGGTGTTTGACACCTTACTTTTTAAGACAAGGCCCTGTAGATGCAACCCAGAGATGAGGATCTTGTTTAAACTGCATAGTAGCTTTTTTTCGTACACACATGGCTATGCCATTATGTTACAAAAAACACCAACAAAAAGACCCAGAAAGATGGTGACAGCACGGATGCCGTCGACCTCTCTCGATGTCTGCTTCTGGGCCGTGAAGTTCCAAAGGACCTTCCAGGAGCTCAGAATCTCTTATGCGTGGCTTGCGGCCACGACGGGAAGGGATGCCATTGCAGCCATCTTTCTTGAGATGACGGTGGAGGTGGTCTGAGCGCACAAAGGTTTTAAAACAGCTGGAGCACTGGTAGGGGCGCAAGCCTGTATGCACACGCATATGATTTTTCAGGTCGTAGTTGTGGGCAAAGGCGGCGCCACACTGAGTACACAGGTAAGGCTTCTCTCCCGTATGCTTGCGCATGTGAACCTTTAGCTTGTCCTGCCTGTAAAAGACCATACAAAAACTTCATATGAGCCACTTCCCATGGGTTTGTGTGAATTAAGCAAATTAACAAAACAATACCATGATATACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03703231_03704355.mRNA False 1687 mRNA 0.41 3 3702173 3704615

Neighbor

gene id symbol gene type direction distance location
CI01000030_03594936_03629403 UNC13A coding upstream 72688 3594936 ~ 3629485 (+)
CI01000030_03580764_03584676 HMG20B coding upstream 116918 3580764 ~ 3585255 (+)
CI01000030_03565934_03569916 EEF2B, EEF2L2, EEF2.1.L, EF2, EEF2 coding upstream 131443 3565785 ~ 3570730 (+)
CI01000030_03253246_03261669 RGMD coding upstream 440230 3253246 ~ 3261943 (+)
CI01000030_03238201_03242662 NA coding upstream 459271 3237992 ~ 3242902 (+)
CI01000030_03715463_03716370 NA coding downstream 9996 3714611 ~ 3717569 (+)
CI01000030_03744173_03745628 FOXQ2 coding downstream 38876 3743491 ~ 3745741 (+)
CI01000030_03765594_03778884 ONECUT3, ONECUT3A coding downstream 60447 3765062 ~ 3779032 (+)
CI01000030_03825765_03826754 NA coding downstream 120800 3825415 ~ 3826794 (+)
CI01000030_03838027_03838812 NA coding downstream 131713 3836328 ~ 3840945 (+)
G159465 NA non-coding upstream 6884 3694956 ~ 3695289 (+)
G159464 NA non-coding upstream 7278 3694655 ~ 3694895 (+)
G159461 NA non-coding upstream 9546 3692378 ~ 3692627 (+)
G159460 NA non-coding upstream 10047 3691833 ~ 3692126 (+)
G159459 NA non-coding upstream 10702 3691232 ~ 3691471 (+)
G159483 NA non-coding downstream 58433 3763048 ~ 3763283 (+)
G159545 NA non-coding downstream 104809 3809424 ~ 3809647 (+)
G159546 NA non-coding downstream 105323 3809938 ~ 3810239 (+)
G159547 NA non-coding downstream 106118 3810733 ~ 3811214 (+)
CI01000030_03018776_03042194 FGF22 other upstream 658400 3018776 ~ 3043773 (+)
G158416 NA other upstream 1087880 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 1419803 2277208 ~ 2282743 (+)
G157726 NA other upstream 2063946 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2695486 1003114 ~ 1003795 (+)
G159685 NA other downstream 727185 4431800 ~ 4488526 (+)
G159816 NA other downstream 812163 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3495320 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4149470 7868292 ~ 7886228 (+)
G162088 NA other downstream 4533350 8237965 ~ 8239604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_02335864_02337990 NA misc CI01000021 null 2335363 ~ 2341260 (-)