CI01000030_03715463_03716370


Basic Information

Item Value
gene id CI01000030_03715463_03716370
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3714611 ~ 3717569 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03715463_03716370.mRNA
CTATAAAAAGAATGAGGGGGCAGAGAAGCCTACAAGGGATCTGCCAAGAGAAGAGGAAAAACTTTCCAAGGTTCTTAGAGATCTCAGTGAGCAGGATGTCTTTGATGTGAATTTAAGTTTATTTAAAATAGTTTCACAATCCACCAGAGATGGCAAAGTGTCAAACCCACAGTCATCAACCATTTGTGTGACCAAAACTTAAATAAAACCATTTTGAATCTGCTAGAAAATATTTTCTTTAGAAAATTATAATTTGTAACGGTCAGATCGGATAAAAAAAATTGTAAAAAAAAAGAATCGAAACAAAGACAGAGTTCAGTTAAGAAAGTACTTGGAAAGTGAAACTCGCTGCACAGAAGCTTACCAAGTCATACCTTAACACAGCAGGCCTCCGTTTTCCATCTCTATGCCATCTGCAAGTGGGTCAAGCGCTCTGAACTTAATCAAGCCAAGTCCCTCTCTTTCCCCATTTAAGATTCCATTATTTCTCTTCTAGCTTGCCTTTCCCGTCTCAGACACCAGAGAGAGTGAGAGTGCATTTGGAGCTCTTACCGGCCGGCAAGAATTGTTTCCTTTTGGGTCAGCTCAGTCTCCCTCTGCCTGCCTGCCTGCCTGCCTCTGTGCCTGGGCAGGGCTCTGCTCTGGAGCAACTGCAGACAGGAAACTTCCGAGTGGCCCTAGTTACACAGGCAAGCCCTTGCCTGATCCCACACAGTCAGACACCTACTAACTCCCCCACTCTATTTTCAGCCCACTGCTCTAGCTTCACTTCCCCTTTGATGATTGGCTTGCCTGCTTCTCAATCACCACACCTCCCCACTAGGATAGGCTACTGGCTGTTCCCTTTCCTGTATGGCCAAGGGCAAGGCACTCTGGGAAGCGCAGTCCTTAAGTATGACTTCACCTGCTTCTAGGCCACTGCTACGAACTACAAGTCCCAAACAGTCTGCTCTTGCCACCCCCACATCTCAGAGCTTGCTTCAACCTTTGCTCCCTTCGGTCGATAGGCCCTGGGCAGACGACACGGGGGACAAGCAGGGGGAAACAAGCTCACCTGCGATGGCCGTGGCGGTGCTTGTTATGGGTTAGCTCTTCCCTCCTCTGTGGCGCTCTCTCTCTCTTAGCTGTCCCTGCTGTTTAAAGCTCTGTATGCGCTAACCAAGCACCAGCAGATCAACTCAATTCCCTTCCTGGTTTCTGGAGGGCAAAAAGGTCCCTCCCTTTCTCTCTCTCTCTCTCGCTCTACCTCTCTCTTAAAGAAACAGCATTCCCCCATGCTGCTCTCCTCTGCTACTCTCTGGGGAATACAGTAAAAGGTTGTTATCATGCCATAGTGGCCACAATCACTTATGACATTAATGCAACGGTAGAGTTCACAAGGATGTCACTGGTAAAACCGGCCTGTATTTGTACAAAGTTGTTTGCTGGGGTGTTGTACATGTACATTGGATGAGTGTATGTGCCAAAATAATGAGAGTTAACCGTCCTTCTTTCTCCCCTGCGTGCGCGAATGCAGTCGCACCCACCCATCCCGTTGCCTGAGGTCATGGAGTCCCACCCCAGAACAAGCCATGGCACATTCCAGGACACTCAGGGTCTGCCAGCAGTCCCCCCCGCAACACATATACACACACCCTCCACTGTCTCAAACTAATACAGCTCACAGAGTGTACCTACTCTCAAGGGGTCGTCGGATAGAAGTGACACTATTCTCTTATTGCTACACCTTTTCGACACCTCATCTTCCATTATATTTAACAACCGAACCTTCCAAAACAATATAAACAGCAATTATAAATAAGCAATCAAACTCCTAAACACGTACTGTGATTCCATACTTACCAAAATCATGCTGAGAGAGGCGATGCGTGCAGTCGACCAGCGGGACAGACATGGATTATCCTCCGCCACTTAGAAACTTGTTCGCTGGTATACCTGCTGCTAGACCTGCTGCTAGACCGAGTTTCTCAAATACAGGAGGAGTAGTATGACCTCTCTGAGATTGACTGTACAATTGAGGACTCTCCCGTGAAACAGGGAGTGGACGCAAAGGAACGTAATTGTGTATGACACTGAGTTGCTTAAGTGCTGAAGTATTAAGTAGGAGACAAGCATGATGAACTAACAAACACCAGCCACAGAGGGCAGTATAATAGGGACACTTAAAACTTGATTCATTGTAAAAAAAGAAACAGCAAAGAAGACTGACAACAACTACAGGAAAATAATCATTCACAAATAAGTTTTATTTTTATATTAGAACTGTATTCAACACATTCCATATGGTA
>TU181042
CAGAGTGTACCTACTCTCAAGGGGTCGTCGGATAGAAGTGACACTATTCTCTTATTGCTACACCTTTTCGACACCTCATCTTCCATTATATTTAACAACCGAACCTTCCAAAACAATATAAACAGCAATTATAAATAAGCAATCAAACTCCTAAACACGTACTGTGATTCCATACTTACCAAAATCATGCTGAGAGAGGCGATGCGTGCAGTCGACCAGCGGGACAGACATGGATTATCCTCCGCCACTTAGAAACTTGTTCGCTGGTATACCTGCTGCTAGACCTGCTGCTAGACCGAGTTTCTCAAATACAGGAGGAGTAGTATGACCTCTCTGAGATTGACTGTACAATTGAGGACTCTCCCGTGAAACAGGGAGTGGACGCAAAGGAACGTAATTGTGTATGACACTGAGTTGCTTAAGTGCTGAAGTATTAAGTAGGAGACAAGCATGATGAACTAACAAACACCAGCCACAGAGGGCAGTATAATAGGGACACTTAAAACTTGATTCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03715463_03716370.mRNA False 2288 mRNA 0.46 2 3714611 3717569
TU181042 True 516 lncRNA 0.43 1 3716945 3717460

Neighbor

gene id symbol gene type direction distance location
CI01000030_03703231_03704355 NA coding upstream 9996 3701601 ~ 3704615 (+)
CI01000030_03594936_03629403 UNC13A coding upstream 85126 3594936 ~ 3629485 (+)
CI01000030_03580764_03584676 HMG20B coding upstream 129356 3580764 ~ 3585255 (+)
CI01000030_03565934_03569916 EEF2B, EEF2L2, EEF2.1.L, EF2, EEF2 coding upstream 143881 3565785 ~ 3570730 (+)
CI01000030_03253246_03261669 RGMD coding upstream 452668 3253246 ~ 3261943 (+)
CI01000030_03744173_03745628 FOXQ2 coding downstream 25922 3743491 ~ 3745741 (+)
CI01000030_03765594_03778884 ONECUT3, ONECUT3A coding downstream 47493 3765062 ~ 3779032 (+)
CI01000030_03825765_03826754 NA coding downstream 107846 3825415 ~ 3826794 (+)
CI01000030_03838027_03838812 NA coding downstream 118759 3836328 ~ 3840945 (+)
CI01000030_03909138_03910046 NA coding downstream 191469 3909038 ~ 3910046 (+)
G159465 NA non-coding upstream 19322 3694956 ~ 3695289 (+)
G159464 NA non-coding upstream 19716 3694655 ~ 3694895 (+)
G159461 NA non-coding upstream 21984 3692378 ~ 3692627 (+)
G159460 NA non-coding upstream 22485 3691833 ~ 3692126 (+)
G159483 NA non-coding downstream 45479 3763048 ~ 3763283 (+)
G159545 NA non-coding downstream 91855 3809424 ~ 3809647 (+)
G159546 NA non-coding downstream 92369 3809938 ~ 3810239 (+)
G159547 NA non-coding downstream 93164 3810733 ~ 3811214 (+)
G159548 NA non-coding downstream 94163 3811732 ~ 3811980 (+)
CI01000030_03018776_03042194 FGF22 other upstream 670838 3018776 ~ 3043773 (+)
G158416 NA other upstream 1100318 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 1432241 2277208 ~ 2282743 (+)
G157726 NA other upstream 2076384 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2707924 1003114 ~ 1003795 (+)
G159685 NA other downstream 714231 4431800 ~ 4488526 (+)
G159816 NA other downstream 799209 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3482366 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4136516 7868292 ~ 7886228 (+)
G162088 NA other downstream 4520396 8237965 ~ 8239604 (+)

Expression


Co-expression Network