CI01000030_03825765_03826754


Basic Information

Item Value
gene id CI01000030_03825765_03826754
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3825415 ~ 3826794 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03825765_03826754.mRNA
ATTTAAAATCATGATTTGCCTAGTATGTTTCACTGGTAGGCTTACAAACTTCTCATGTCTATATTTATCCTCTTTCTAACAGGAAACTGCAGTATGTACACTAATAAGTGATAATGAATTAAGTTGCATATTATAATGCACGCGTATTCTTAAACGGAAGAGGAAAAATCAAGTTCTTTTGCAGTGTTCTTCTTCAATTCTGTACAGCAAAACCAATCATTGTTATTATTGCGATTCTCTAAACAAATACATATATATATATATATATATATATATACACACTTTTTTTCCAAAGTATTGGTTTGAAACTGGGGCCTACTGATCATCAAGCTCTTTGTCTTTCCAGAACAATGAGCACCATAAGAAGTCCCGAGCATCTAGCAGACGCTTGTCTTCCGTCCTCCACGGGCGAGATCTCAACAAGCAAAGATGAACCTGGAAGTCTAAGCAGGCTTCTGCCACTCACCGGCTCATCTGCACTGGCACGACGACTGTTTCACCTCCAGTCGTATCGCAACCCACTCGTACCCAGTAGACGACGTAAACGCGAGATGACCCCTGCTGAGAAAAAGGATGCATCGTATTGGGTCAAGCGGCGGAAGAATAACGAGGCTGCCAAGCGTTCCCGCGAGAAGCGACGACTCAACGACTTCATGCTGGAGGGACAGCTTCTGGCGCTGAGTGAGGAGAACGCCCAACTCAGGGCAGAGGTGCTGAGTTTACAGTATCACATGGGAATTGGGCGAGGTCTGGACGTCAATCATCCCATGATGCCATTCCACTATCCTGTTGCGTCCCATCTCAAGCCTTCCCTGTGGGGTTTGGGTCCCGGTACTGCTGCTCTTTCAGCAGAAGGTCCAGAGCGGTACCCCTCTTGGCCACAGCATAGCTCATCTCCATTCATCTCACCTTTGAGGGTGCCTCCTAAAAGTGCCGACCTACCTTCACAGATTAGCCACTTAGATGACAACGCTGACCGAGTGGAGTCAGATCCAGCATCTCACCCCCAGGTCTCTTCCAGCAATGACCCACCAAGCCACCCACAACTGTTTCCGGCCCAGAGAGCACCTGCAGCCTCACCGCCCCCTCCTCACCTGCTGCCCGGGTTGAGCCACTCTGCCACCCAGCACAACAACCAGATGTTACCTTGGGGCTTGTCGTCTTTGTGTCCATCTCCCCTTCATCCCAACTGGCCGTTGTCCTTGCCTCTGTCACTACGAGACACAGACGGATCTCATAATGGAGGAAGGTCCCTCTGGAACTTCAACAGCAGGTACAGCATGCTGTCTGCTGAGATCTCAGGACAGCTCAGAAGAATATTTTGCCCGGAGAACTCTTAATCAGCAATAATGCTGCCTGAACAGTACTTTTATTATGATA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03825765_03826754.mRNA True 1380 mRNA 0.48 1 3825415 3826794

Neighbor

gene id symbol gene type direction distance location
CI01000030_03765594_03778884 ONECUT3, ONECUT3A coding upstream 46383 3765062 ~ 3779032 (+)
CI01000030_03744173_03745628 FOXQ2 coding upstream 79674 3743491 ~ 3745741 (+)
CI01000030_03715463_03716370 NA coding upstream 107846 3714611 ~ 3717569 (+)
CI01000030_03703231_03704355 NA coding upstream 120800 3701601 ~ 3704615 (+)
CI01000030_03594936_03629403 UNC13A coding upstream 195930 3594936 ~ 3629485 (+)
CI01000030_03838027_03838812 NA coding downstream 9534 3836328 ~ 3840945 (+)
CI01000030_03909138_03910046 NA coding downstream 82244 3909038 ~ 3910046 (+)
CI01000030_03915675_03916993 NA coding downstream 88492 3915286 ~ 3916993 (+)
CI01000030_03917423_03918481 NA coding downstream 90629 3917423 ~ 3918674 (+)
CI01000030_03926592_03926762 NA coding downstream 99798 3926592 ~ 3927205 (+)
G159556 NA non-coding upstream 864 3824287 ~ 3824551 (+)
G159553 NA non-coding upstream 5369 3819821 ~ 3820046 (+)
G159552 NA non-coding upstream 8416 3816762 ~ 3816999 (+)
G159548 NA non-coding upstream 13435 3811732 ~ 3811980 (+)
G159547 NA non-coding upstream 14201 3810733 ~ 3811214 (+)
G159561 NA non-coding downstream 16994 3843788 ~ 3843996 (+)
G159484 NA non-coding downstream 25198 3851992 ~ 3919867 (+)
G159490 NA non-coding downstream 79287 3906081 ~ 3908489 (+)
G159593 NA non-coding downstream 107329 3934123 ~ 3934444 (+)
G159604 NA non-coding downstream 147436 3974230 ~ 3974587 (+)
CI01000030_03018776_03042194 FGF22 other upstream 781642 3018776 ~ 3043773 (+)
G158416 NA other upstream 1211122 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 1543045 2277208 ~ 2282743 (+)
G157726 NA other upstream 2187188 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2818728 1003114 ~ 1003795 (+)
G159685 NA other downstream 605006 4431800 ~ 4488526 (+)
G159816 NA other downstream 689984 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3373141 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4027291 7868292 ~ 7886228 (+)
G162088 NA other downstream 4411171 8237965 ~ 8239604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021107 NA non-coding NC_007133.7 CM002906.2 20522204 ~ 20547540 (-)