XLOC_008824


Basic Information

Item Value
gene id XLOC_008824
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 46367543 ~ 46378571 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018801
gactGAAGCTGAAGACCTGAGTTTGGACCAGGACTTCCTGACACACTAATgtttttagtaaaaaataaaaataaaatgtttatgtaaaCGTCATTAAATCATGGAAATGTATTGATTTTATGTATGTTAGCTAGTATGTCATATCGCCTATAATGTATATTTATCACATCTGAATATACAATGCACAACACGATGTTAAAACTGTGACAACATACCTCATGTATACTGTGACGACCCCATCTTTATTACACTGTACTGTTATACTGCTAATAATACATTATTGCCAATAGAAATAAAGTGACTGGAAATAAACTTGTGAGATGAGCAAAGTTGTTCTGcctttatttacagtataaaacacCTTTTATTGAACATATTATAACATATTTAATTTGAGATGTGCATGTTAATAACATTTTAGAATCAATCACACTGTATGAAAAAATATCCTAATTCCTACATTAAAGGTGAACAAATTGCATTTACAGACTTTTATAAACACGAAACACACGACATACAGGCTACAAACTAATACAAAGCAGATGCACTAGCTagcattagcattatttattagTCAGAACAGTTTTCTTATCTAAATATGCACACCACAGGCGTATTCTCCACAGACATGGGACTTGTTATTGAAATGTGAGTAGGAAATATGCTTACGTAAAAGCACACCTGACTGGTTTACCTGGACGAGAAGTTGCTGAATGAGTCTGCAATTTTATGTTCCGTTCTCAGCCAATCACACATCCTACTTTATATTCATGAACCACGCCCAGCGTTTATAAAGATTCTTCATTCGCCGACTACCTGTCGCTCACTGACCGTCAGCGAATCAGATAGACGGAGTTCTGTTtacctaattaatattcatgagcacaACGGATTAAAAACAGAAATCTTCCACAAACGTCGATCAGAAAATTCATAACTGAGCTCGTTCATCATGGATCTTGCCGCAGCTGTTGGAGATGAGGAGGTGAAGAAGAAGGAGGGTAAACAAGTGGAAGGAATCTTTGGAAAGAAGGACAAAGATAAAGACAAGAGCAAAGACAAGAGTGACTCTAAGCATAAGGATAAAGATAAGCACAAAGATAAAGAACATAAAGACAaagacaagaagaagaagaaggaacaCAAGAAGAAAGACGGTGGAAAGTCCTCCTCCTCCAGTGATTCGGACTAAAGCAAGAGTGAAGATTCATCTGACACCTCCAGGAACACAATGAAAAGttctttattatatgtttttataaaCAGATGAATGCAATATTATTTGATGCAGGAGGGAACAATAAATCACATGATGGTTTTGAGCTGTAAAACATCCAGATGTCCACAAGGTGGCGCCACTTACATGCAAACGCTTAATTGTAATCAAACACTGGAATACCAGAGACTGAGCTTTGTACTGTGAACatgcagttttaataataaaatcttgTGTCTGAATTAGTTCTATCAATTTCCTCTTTGTTAACTACTATAAAGGCTTTGTGTAAGATGATTTAAAG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018801 True 1520 lncRNA 0.35 4 46367543 46378571

Neighbor

gene id symbol gene type direction distance location
XLOC_008823 wu:fb18f06 coding upstream 8777 46356879 ~ 46358766 (+)
XLOC_008822 si:ch1073-340i21.2 coding upstream 12151 46344655 ~ 46355392 (+)
XLOC_008821 si:ch1073-340i21.3 coding upstream 31144 46329149 ~ 46336399 (+)
XLOC_008820 NA coding upstream 49901 46315519 ~ 46317642 (+)
XLOC_008819 si:ch1073-190k2.1 coding upstream 52310 46313082 ~ 46315233 (+)
XLOC_008825 NA coding downstream 7203 46385774 ~ 46598864 (+)
XLOC_008826 CABZ01044047.1 coding downstream 216895 46595466 ~ 46595580 (+)
XLOC_008827 CABZ01044048.1 coding downstream 226911 46605482 ~ 46624720 (+)
XLOC_008828 NA coding downstream 283278 46661849 ~ 46662395 (+)
XLOC_008829 CR381579.3 coding downstream 316921 46695492 ~ 46745189 (+)
XLOC_008463 BX663520.1 misc upstream 25115261 21252191 ~ 21252282 (+)
XLOC_008818 CABZ01044023.1 non-coding upstream 64121 46291409 ~ 46303422 (+)
XLOC_008817 CABZ01044022.1 non-coding upstream 77031 46288890 ~ 46290512 (+)
XLOC_008816 NA non-coding upstream 80538 46268168 ~ 46287005 (+)
XLOC_008815 NA non-coding upstream 109102 46221428 ~ 46258441 (+)
XLOC_008830 NA non-coding downstream 420898 46799469 ~ 46801184 (+)

Expression


Co-expression Network